Factsheet for TraesCS5B01G008000.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

mitochondrion 2
nucleus 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
iPSORT:	mitochondrion
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G010400.1	Wheat	nucleus	78.82	65.9
TraesCS3B01G493100.1	Wheat	nucleus	68.63	50.0
HORVU3Hr1G086260.1	Barley	nucleus	64.71	49.25
TraesCS3B01G608600.1	Wheat	mitochondrion	49.41	48.46
TraesCS3B01G612700.1	Wheat	nucleus	36.08	47.42
TraesCS6B01G369100.1	Wheat	nucleus	47.45	47.08
TraesCS6B01G369000.1	Wheat	nucleus	45.88	45.7
TraesCS3B01G612300.1	Wheat	nucleus	29.41	43.35
TraesCS3B01G612800.1	Wheat	nucleus	47.06	42.25
TraesCS3B01G612900.1	Wheat	nucleus	46.67	41.9
Os09t0402533-00	Rice	endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole	9.8	40.98
Zm00001d039080_P001	Maize	nucleus	38.43	39.68
Zm00001d009628_P001	Maize	nucleus	38.43	39.52
TraesCS3B01G612600.1	Wheat	nucleus	49.8	38.72
EES19977	Sorghum	nucleus	36.47	37.96
TraesCS3B01G612400.1	Wheat	nucleus	48.24	36.83
TraesCS3B01G612500.1	Wheat	nucleus	45.88	36.79
Os09t0116800-00	Rice	mitochondrion	29.41	35.71
Os01t0975800-00	Rice	nucleus	29.02	35.58
TraesCS3B01G595700.1	Wheat	nucleus	47.45	31.27
GSMUA_Achr5P26530_001	Banana	mitochondrion, nucleus, plastid	27.06	30.67
TraesCS5B01G471900.1	Wheat	mitochondrion	20.78	30.64
GSMUA_Achr8P07230_001	Banana	nucleus	27.45	29.66
TraesCS1B01G322300.1	Wheat	nucleus	36.47	29.62
TraesCS3B01G608700.1	Wheat	mitochondrion, plastid	34.51	28.11
TraesCS1B01G080200.1	Wheat	nucleus	19.22	27.53
TraesCS7B01G240500.1	Wheat	plastid	20.0	26.42
TraesCS7B01G211300.1	Wheat	plastid	19.61	25.51
TraesCS7B01G240400.1	Wheat	plastid	19.61	25.51

Protein Annotations

EnsemblPlants:TraesCS5B01G008000.1	EnsemblPlantsGene:TraesCS5B01G008000	Gene3D:3.40.1810.10	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005515	GO:GO:0046983	InterPro:IPR002100	InterPro:IPR036879	InterPro:TF_MADSbox
InterPro:TF_MADSbox_sf	ncoils:Coil	PANTHER:PTHR11945	PANTHER:PTHR11945:SF225	PFAM:PF00319	PFscan:PS50066
PRINTS:PR00404	SMART:SM00432	SUPFAM:SSF55455	MapMan:15.5.14	:	:

Description

No Description!

Coordinates

chr5B:-:8936244..8937011

Molecular Weight (calculated)

27740.9 Da

IEP (calculated)

7.981

GRAVY (calculated)

-0.293

Length

255 amino acids

Sequence
(BLAST)

001: MAPKRKGGNG RKKTIMRRVE KEGARQVCFT KRRQGLFNKA NELAVMCGAE VAVVAYSPAG NDFSFGHPSA EAVIDRFLAG GATGVLSATD NNKLKKLHLQ
101: HDELRTQLKE VKMRKECMEE AMAKKRAMGD QIAAWLNPEL GDMGEEEMMA FAAKLMPVRV AVSECANQVL LNMGMENVLR ALQAHGVPLP QQLFGGSTFE
201: FGSTSTNTGM EMHQVTMAMP PPEFPADMEM PPPMGIAAGA DMVQQATGTN MGFPY

Best Arabidopsis Sequence Match ( AT2G24840.1 )
(BLAST)

001: MYVTKYKNKL PTLQVDLIIM PHQTQACIYK QTLSLHQIFQ QRKATKTLHT KKTMMSKKKE SIGRQKIPMV KIKKESHRQV TFSKRRAGLF KKASELCTLC
101: GAEIGIIVFS PAKKPFSFGH PSVESVLDRY VSRNNMSLAQ SQQLQGSPAA SCELNMQLTH ILSEVEEEKK KGQAMEEMRK ESVRRSMINW WEKPVEEMNM
201: VQLQEMKYAL EELRKTVVTN MASFNEAKDD VFGFLDNKVT VPPYVNMPSG PSNIYNFANG NGCF

Arabidopsis Description

AGL61Agamous-like MADS-box protein AGL61 [Source:UniProtKB/Swiss-Prot;Acc:Q4PSU4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.