Factsheet for TraesCS3B01G612400.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G612700.1	Wheat	nucleus	53.59	92.27
TraesCS3B01G612600.1	Wheat	nucleus	90.42	92.07
TraesCS3B01G612900.1	Wheat	nucleus	76.95	90.49
TraesCS3B01G612800.1	Wheat	nucleus	76.65	90.14
TraesCS3B01G612500.1	Wheat	nucleus	85.63	89.94
TraesCS3B01G612300.1	Wheat	nucleus	44.31	85.55
TraesCS3B01G608700.1	Wheat	mitochondrion, plastid	71.86	76.68
TraesCS3B01G595700.1	Wheat	nucleus	68.56	59.17
TraesCS3B01G608600.1	Wheat	mitochondrion	39.22	50.38
TraesCS6B01G369100.1	Wheat	nucleus	37.13	48.25
TraesCS5B01G008000.1	Wheat	nucleus	36.83	48.24
TraesCS6B01G369000.1	Wheat	nucleus	35.93	46.88
TraesCS3B01G493100.1	Wheat	nucleus	45.21	43.14
Os09t0402533-00	Rice	endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole	7.78	42.62
Zm00001d039080_P001	Maize	nucleus	31.14	42.11
EES19977	Sorghum	nucleus	30.84	42.04
Zm00001d009628_P001	Maize	nucleus	30.84	41.53
Os01t0975800-00	Rice	nucleus	25.15	40.38
Os09t0116800-00	Rice	mitochondrion	23.35	37.14
TraesCS1B01G322300.1	Wheat	nucleus	31.74	33.76
GSMUA_Achr5P26530_001	Banana	mitochondrion, nucleus, plastid	21.26	31.56
GSMUA_Achr8P07230_001	Banana	nucleus	20.96	29.66
TraesCS1B01G080200.1	Wheat	nucleus	15.57	29.21
TraesCS5B01G471900.1	Wheat	mitochondrion	13.47	26.01
TraesCS7B01G211300.1	Wheat	plastid	14.97	25.51
TraesCS7B01G240400.1	Wheat	plastid	14.97	25.51
TraesCS7B01G240500.1	Wheat	plastid	14.67	25.39

Protein Annotations

EnsemblPlants:TraesCS3B01G612400.1	EnsemblPlantsGene:TraesCS3B01G612400	Gene3D:3.40.1810.10	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005515	GO:GO:0046983	InterPro:IPR002100	InterPro:IPR036879	InterPro:TF_MADSbox
InterPro:TF_MADSbox_sf	ncoils:Coil	PANTHER:PTHR11945	PANTHER:PTHR11945:SF225	PFAM:PF00319	PFscan:PS50066
PRINTS:PR00404	SEG:seg	SMART:SM00432	SUPFAM:SSF55455	MapMan:15.5.14	:

Description

No Description!

Coordinates

chr3B:+:829817279..829818734

Molecular Weight (calculated)

36332.4 Da

IEP (calculated)

4.724

GRAVY (calculated)

-0.439

Length

334 amino acids

Sequence
(BLAST)

001: MAAPNRRGGS GRKKIVIRRI EQEDARFVCY SKRRQGFFSK ATDLAVLTGA QVAALAFSPR GRAFSFGDPS VDSVVKRFLA GEAAGAGARE EGAADHRLLA
101: GEGAAGEDEK LEKLQQEFDE LRTELVELKK RTKRTDKAMA KERSAGDQIA AWFDPKARDM GDEDMAAFFA ALMQMKDAVS DRANQVLLEA MHAHMSRMAE
201: VAPPPPPPQI SLEFGSSSGT ANDGMEFQFL VPPPQEQGFE AGMDMQQMVM APLPPSQVVA AGMDVQEMPP PPGLAAGMDT EQMQMTMPKP PGFDAGLDKE
301: IDQWLDVMLP RPEFTAGMET VQQGLHQPNA GFPY

Best Arabidopsis Sequence Match ( AT4G36590.1 )
(BLAST)

001: MVRSTKGRQK IEMKKMENES NLQVTFSKRR FGLFKKASEL CTLSGAEILL IVFSPGGKVF SFGHPSVQEL IHRFSNPNHN SAIVHHQNNN LQLVETRPDR
101: NIQYLNNILT EVLANQEKEK QKRMVLDLLK ESREQVGNWY EKDVKDLDMN ETNQLISALQ DVKKKLVREM SQYSQVNVSQ NYFGQSSGVI GGGNVGIDLF
201: DQRRNAFNYN PNMVFPNHTP PMFGYNNDGV LVPISNMNYM SSYNFNQS

Arabidopsis Description

MADS-box protein [Source:UniProtKB/TrEMBL;Acc:O23222]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.