Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G310700.1 | Wheat | nucleus | 87.9 | 89.03 |
| HORVU1Hr1G067950.1 | Barley | nucleus | 70.06 | 50.93 |
| Os09t0402533-00 | Rice | endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole | 9.55 | 49.18 |
| TraesCS6B01G369100.1 | Wheat | nucleus | 39.49 | 48.25 |
| TraesCS6B01G369000.1 | Wheat | nucleus | 37.9 | 46.48 |
| TraesCS3B01G608600.1 | Wheat | mitochondrion | 38.22 | 46.15 |
| TraesCS3B01G612700.1 | Wheat | nucleus | 26.11 | 42.27 |
| Zm00001d039080_P001 | Maize | nucleus | 31.85 | 40.49 |
| Zm00001d009628_P001 | Maize | nucleus | 31.21 | 39.52 |
| EES19977 | Sorghum | nucleus | 30.57 | 39.18 |
| TraesCS3B01G612300.1 | Wheat | nucleus | 21.34 | 38.73 |
| Os01t0975800-00 | Rice | nucleus | 25.48 | 38.46 |
| TraesCS3B01G612800.1 | Wheat | nucleus | 33.44 | 36.97 |
| Os09t0116800-00 | Rice | mitochondrion | 24.52 | 36.67 |
| TraesCS3B01G612900.1 | Wheat | nucleus | 33.12 | 36.62 |
| TraesCS5B01G008000.1 | Wheat | nucleus | 29.62 | 36.47 |
| GSMUA_Achr8P07230_001 | Banana | nucleus | 25.48 | 33.9 |
| GSMUA_Achr5P26530_001 | Banana | mitochondrion, nucleus, plastid | 24.2 | 33.78 |
| TraesCS3B01G612500.1 | Wheat | nucleus | 33.44 | 33.02 |
| TraesCS3B01G612600.1 | Wheat | nucleus | 33.76 | 32.32 |
| TraesCS3B01G612400.1 | Wheat | nucleus | 33.76 | 31.74 |
| TraesCS3B01G493100.1 | Wheat | nucleus | 31.85 | 28.57 |
| TraesCS5B01G471900.1 | Wheat | mitochondrion | 15.29 | 27.75 |
| TraesCS3B01G595700.1 | Wheat | nucleus | 34.08 | 27.65 |
| TraesCS1B01G080200.1 | Wheat | nucleus | 15.29 | 26.97 |
| TraesCS7B01G240500.1 | Wheat | plastid | 15.61 | 25.39 |
| TraesCS7B01G211300.1 | Wheat | plastid | 15.61 | 25.0 |
| TraesCS7B01G240400.1 | Wheat | plastid | 15.61 | 25.0 |
| TraesCS3B01G608700.1 | Wheat | mitochondrion, plastid | 23.25 | 23.32 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | GO:GO:0000977 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0045944 | GO:GO:0046983 | InterPro:IPR002100 | InterPro:IPR036879 | InterPro:MADS_MEF2-like |
| PFAM:PF00319 | PRINTS:PR00404 | PFscan:PS50066 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF225 | SMART:SM00432 |
| SUPFAM:SSF55455 | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | EnsemblPlantsGene:TraesCS1B01G322300 | EnsemblPlants:TraesCS1B01G322300.1 | TIGR:cd00265 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr1B:-:546859909..546860853
Molecular Weight (calculated)
32295.6 Da
IEP (calculated)
4.936
GRAVY (calculated)
-0.114
Length
314 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRKKIVIRR IENKAARDIC FSKRREGLFR KANELAVMCG AEVAAVVYSP AGKAYSFGHP SAEDIVDRFL RPAEQAGAAG AGKGAAVDPD RLAELQQKYN
101: KLSTELGAVE KWKERWGEAI AKGRAEGSQA AAWLDAVAGQ RDMGDADMLA CMAALRDAQV TVAAGVNQVL QDGRRDREAA LAPLPPQLLA GGGGFELGGT
201: GQMMAVMPTP GFAVGGGFEV GGTSANGRME SLMTAIAGGG KFELGGTSVN GGTDQMVMVM PTPGFAGGVG FEPDPWFELG GTSANGGMEE IMTAMAGGGG
301: FELGGTSVNG GSWV
101: KLSTELGAVE KWKERWGEAI AKGRAEGSQA AAWLDAVAGQ RDMGDADMLA CMAALRDAQV TVAAGVNQVL QDGRRDREAA LAPLPPQLLA GGGGFELGGT
201: GQMMAVMPTP GFAVGGGFEV GGTSANGRME SLMTAIAGGG KFELGGTSVN GGTDQMVMVM PTPGFAGGVG FEPDPWFELG GTSANGGMEE IMTAMAGGGG
301: FELGGTSVNG GSWV
001: MVRSTKGRQK IEMKKMENES NLQVTFSKRR FGLFKKASEL CTLSGAEILL IVFSPGGKVF SFGHPSVQEL IHRFSNPNHN SAIVHHQNNN LQLVETRPDR
101: NIQYLNNILT EVLANQEKEK QKRMVLDLLK ESREQVGNWY EKDVKDLDMN ETNQLISALQ DVKKKLVREM SQYSQVNVSQ NYFGQSSGVI GGGNVGIDLF
201: DQRRNAFNYN PNMVFPNHTP PMFGYNNDGV LVPISNMNYM SSYNFNQS
101: NIQYLNNILT EVLANQEKEK QKRMVLDLLK ESREQVGNWY EKDVKDLDMN ETNQLISALQ DVKKKLVREM SQYSQVNVSQ NYFGQSSGVI GGGNVGIDLF
201: DQRRNAFNYN PNMVFPNHTP PMFGYNNDGV LVPISNMNYM SSYNFNQS
Arabidopsis Description
MADS-box protein [Source:UniProtKB/TrEMBL;Acc:O23222]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.