Factsheet for TraesCS3B01G595700.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G527400.1	Wheat	nucleus	87.86	85.21
TraesCS3B01G612800.1	Wheat	nucleus	51.94	70.77
TraesCS3B01G612900.1	Wheat	nucleus	51.94	70.77
TraesCS3B01G612400.1	Wheat	nucleus	59.17	68.56
TraesCS3D01G532900.1	Wheat	nucleus	44.19	68.13
TraesCS3B01G612600.1	Wheat	nucleus	57.36	67.68
TraesCS3B01G612700.1	Wheat	nucleus	33.85	67.53
TraesCS3B01G612500.1	Wheat	nucleus	53.49	65.09
TraesCS3B01G612300.1	Wheat	nucleus	28.68	64.16
TraesCS3B01G608700.1	Wheat	mitochondrion, plastid	42.64	52.72
TraesCS5B01G008000.1	Wheat	nucleus	31.27	47.45
TraesCS3B01G608600.1	Wheat	mitochondrion	31.52	46.92
TraesCS6B01G369100.1	Wheat	nucleus	30.23	45.53
TraesCS6B01G369000.1	Wheat	nucleus	29.46	44.53
EES19977	Sorghum	nucleus	27.39	43.27
Zm00001d009628_P001	Maize	nucleus	27.65	43.15
Zm00001d039080_P001	Maize	nucleus	27.39	42.91
TraesCS3B01G493100.1	Wheat	nucleus	38.24	42.29
Os09t0402533-00	Rice	endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole	6.46	40.98
Os01t0975800-00	Rice	nucleus	21.96	40.87
Os09t0116800-00	Rice	mitochondrion	21.19	39.05
TraesCS1B01G322300.1	Wheat	nucleus	27.65	34.08
GSMUA_Achr8P07230_001	Banana	nucleus	19.9	32.63
GSMUA_Achr5P26530_001	Banana	mitochondrion, nucleus, plastid	18.35	31.56
TraesCS1B01G080200.1	Wheat	nucleus	12.66	27.53
TraesCS5B01G471900.1	Wheat	mitochondrion	11.89	26.59
TraesCS7B01G211300.1	Wheat	plastid	12.14	23.98
TraesCS7B01G240400.1	Wheat	plastid	12.14	23.98
TraesCS7B01G240500.1	Wheat	plastid	11.63	23.32

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	ncoils:Coil	GO:GO:0000977	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0045944	GO:GO:0046983	InterPro:IPR002100	InterPro:IPR036879
InterPro:MADS_MEF2-like	PFAM:PF00319	PRINTS:PR00404	PFscan:PS50066	PANTHER:PTHR11945	PANTHER:PTHR11945:SF225
SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	EnsemblPlantsGene:TraesCS3B01G595700	EnsemblPlants:TraesCS3B01G595700.1
TIGR:cd00265	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr3B:+:818785742..818786905

Molecular Weight (calculated)

41931.8 Da

IEP (calculated)

4.420

GRAVY (calculated)

-0.203

Length

387 amino acids

Sequence
(BLAST)

001: MAAPNRRGGS GRKKIVIRRI EQEDARQVTY AKRRVGLFNK ASELAVLTGA QVAALAFSPG GKVFSFGHPS VDSVVERFLP GERLGACPRA NGRFLAAEGA
101: VEGAADEDNV NELAQQLAEM RAELMEVKKQ RKRIDKAMAK ERAAGDQIAA WVDPNVRDMG DEDMAAFFAM LLKVKTDVSD RANQVLLDFS RKVEISPPSP
201: AQIFGGSIFE FGSSSGSAHA GMEFQFLVPP PQGQGFEAGM DMQQMVMAPL PPPLGFPSGI DMQQQMVLDM PPAQVVAAGM DMQQQMAMEM HPAQVVAAGV
301: DMQEMPPAQV VAAGMDMQEM PPPPGFVAGM DIDMEQMQIM IGQPPSFEAG METELHQWLM AMPPPEFPAG LEMAQQVLEP NAEEEKI

Best Arabidopsis Sequence Match ( AT4G36590.1 )
(BLAST)

001: MVRSTKGRQK IEMKKMENES NLQVTFSKRR FGLFKKASEL CTLSGAEILL IVFSPGGKVF SFGHPSVQEL IHRFSNPNHN SAIVHHQNNN LQLVETRPDR
101: NIQYLNNILT EVLANQEKEK QKRMVLDLLK ESREQVGNWY EKDVKDLDMN ETNQLISALQ DVKKKLVREM SQYSQVNVSQ NYFGQSSGVI GGGNVGIDLF
201: DQRRNAFNYN PNMVFPNHTP PMFGYNNDGV LVPISNMNYM SSYNFNQS

Arabidopsis Description

MADS-box protein [Source:UniProtKB/TrEMBL;Acc:O23222]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.