CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d009628_P001	Maize	nucleus	93.47	92.34
HORVU6Hr1G081660.1	Barley	nucleus	48.16	65.19
HORVU3Hr1G116800.1	Barley	mitochondrion, nucleus, plastid	47.35	64.09
Os09t0402533-00	Rice	endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole	15.1	60.66
Os01t0975800-00	Rice	nucleus	50.61	59.62
Os09t0116800-00	Rice	mitochondrion	49.39	57.62
TraesCS6D01G319100.1	Wheat	nucleus	60.0	56.98
TraesCS6A01G338400.1	Wheat	nucleus	58.37	56.97
TraesCS6B01G369100.1	Wheat	nucleus	59.59	56.81
TraesCS6B01G369000.1	Wheat	nucleus	57.55	55.08
TraesCS3D01G540700.1	Wheat	mitochondrion, nucleus, plastid	57.96	55.04
TraesCS3A01G535200.1	Wheat	nucleus	58.37	55.0
TraesCS3B01G608600.1	Wheat	mitochondrion	57.96	54.62
TraesCS3B01G612700.1	Wheat	nucleus	34.69	43.81
TraesCSU01G235300.1	Wheat	nucleus	33.88	42.78
GSMUA_Achr8P07230_001	Banana	nucleus	40.41	41.95
TraesCS3B01G612300.1	Wheat	nucleus	29.39	41.62
GSMUA_Achr5P26530_001	Banana	mitochondrion, nucleus, plastid	37.96	41.33
TraesCS3D01G513800.1	Wheat	nucleus, plastid	42.45	37.01
KXG34713	Sorghum	nucleus	36.73	36.59
TraesCS5B01G008000.1	Wheat	nucleus	37.96	36.47
TraesCS3B01G612900.1	Wheat	nucleus	42.04	36.27
TraesCS3B01G612800.1	Wheat	nucleus	42.04	36.27
KXG34716	Sorghum	nucleus	33.47	35.34
EER96088	Sorghum	nucleus	35.1	34.96
TraesCS3D01G532900.1	Wheat	nucleus	35.51	34.66
KXG20143	Sorghum	nucleus	25.31	33.7
KXG21744	Sorghum	nucleus	27.35	33.67
TraesCS3B01G612500.1	Wheat	nucleus	41.63	32.08
TraesCS3A01G359300.1	Wheat	nucleus	42.86	31.91
TraesCS3B01G612600.1	Wheat	nucleus	42.04	31.4
TraesCS3B01G612400.1	Wheat	nucleus	42.04	30.84
HORVU3Hr1G086260.1	Barley	nucleus	42.04	30.75
TraesCS3D01G446900.1	Wheat	nucleus	41.22	30.61
TraesCS1B01G322300.1	Wheat	nucleus	39.18	30.57
TraesCS1D01G310700.1	Wheat	nucleus	38.37	30.32
EER88419	Sorghum	nucleus	25.31	28.84
EER96091	Sorghum	nucleus	28.16	28.63
TraesCS3B01G493100.1	Wheat	nucleus	40.0	28.0
OQU80165	Sorghum	nucleus	24.08	27.83
TraesCS5A01G010400.1	Wheat	nucleus	34.29	27.54
KXG24793	Sorghum	nucleus	27.76	27.53
KXG24792	Sorghum	nucleus	27.76	27.53
TraesCS3B01G595700.1	Wheat	nucleus	43.27	27.39
EER89159	Sorghum	nucleus	24.9	26.64
TraesCS3A01G527400.1	Wheat	nucleus	42.86	26.32
OQU80162	Sorghum	nucleus	26.12	25.91
OQU75616	Sorghum	nucleus	26.12	25.91
TraesCS3A01G454500.1	Wheat	nucleus	30.2	23.72
KXG29537	Sorghum	nucleus	29.39	23.08
HORVU1Hr1G067950.1	Barley	nucleus	40.0	22.69
TraesCS3B01G608700.1	Wheat	mitochondrion, plastid	25.71	20.13

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	EntrezGene:8074825	UniProt:C5YW05	ncoils:Coil	EnsemblPlants:EES19977
ProteinID:EES19977	ProteinID:EES19977.1	GO:GO:0000977	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0045944	GO:GO:0046983	InterPro:IPR002100	InterPro:IPR036879	InterPro:MADS_MEF2-like
PFAM:PF00319	PRINTS:PR00404	PFscan:PS50066	PANTHER:PTHR11945	PANTHER:PTHR11945:SF225	SMART:SM00432
EnsemblPlantsGene:SORBI_3009G239000	SUPFAM:SSF55455	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI0001A892E1	RefSeq:XP_002441547.1
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr9:-:57687169..57688124

Molecular Weight (calculated)

25450.2 Da

IEP (calculated)

8.272

GRAVY (calculated)

-0.173

Length

245 amino acids

Sequence
(BLAST)

001: MAPPRRPSMG RQKIEIRRIE SDEARQVCFS KRRAGLFKKA SELSILCGAD VAAVVFSPAG KAFSFGHPSV ESVVERFLAS SSPSPAGAGA GHSSAGGGED
101: RAVSELNRQH GELRAQLDAE KTRQERADEA IRKEREARSP AMAWIDADLS AMGHDDLVAF WTALAGVQAA VAASADQLLR DALLVGRRGR HQQPAQLAGG
201: GVAFDVGAFG IGMQVQPPPG FAGVDLQGFG LGGQAAAILG AAGPS

Best Arabidopsis Sequence Match ( AT5G60440.1 )
(BLAST)

001: MVKKSKGRQK IEMVKMKNES NLQVTFSKRR SGLFKKASEL CTLCGAEVAI VVFSPGRKVF SFGHPNVDSV IDRFINNNPL PPHQHNNMQL RETRRNSIVQ
101: DLNNHLTQVL SQLETEKKKY DELKKIREKT KALGNWWEDP VEELALSQLE GFKGNLENLK KVVTVEASRF FQANVPNFYV GSSSNNAAFG IDDGSHINPD
201: MDLFSQRRMM DINAFNYNQN QIHPNHALPP FGNNAYGINE GFVPEYNVNF RPEYNPNQNQ IQNQNQVQIQ IQNQSFKREN ISEYEHHHGY PPQSRSDYY

Arabidopsis Description

AGL62Agamous-like MADS-box protein AGL62 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKK2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.