Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| OQU80165 | Sorghum | nucleus | 81.38 | 94.81 |
| OQU75616 | Sorghum | nucleus | 90.28 | 90.28 |
| KXG24793 | Sorghum | nucleus | 79.35 | 79.35 |
| KXG24792 | Sorghum | nucleus | 76.11 | 76.11 |
| Zm00001d024389_P001 | Maize | nucleus | 74.09 | 72.62 |
| GSMUA_Achr5P26530_001 | Banana | mitochondrion, nucleus, plastid | 29.15 | 32.0 |
| GSMUA_Achr8P07230_001 | Banana | nucleus | 27.13 | 28.39 |
| KXG20143 | Sorghum | nucleus | 20.24 | 27.17 |
| EER88419 | Sorghum | nucleus | 23.48 | 26.98 |
| KXG34713 | Sorghum | nucleus | 26.72 | 26.83 |
| KXG21744 | Sorghum | nucleus | 21.46 | 26.63 |
| EES19977 | Sorghum | nucleus | 25.91 | 26.12 |
| EER89159 | Sorghum | nucleus | 23.08 | 24.89 |
| KXG34716 | Sorghum | nucleus | 22.67 | 24.14 |
| EER96091 | Sorghum | nucleus | 21.86 | 22.41 |
| EER96088 | Sorghum | nucleus | 22.27 | 22.36 |
| KXG29537 | Sorghum | nucleus | 23.08 | 18.27 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | UniProt:A0A1Z5R8S6 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0046983 | InterPro:IPR002100 | InterPro:IPR036879 | EnsemblPlants:OQU80162 |
| ProteinID:OQU80162 | ProteinID:OQU80162.1 | PFAM:PF00319 | PRINTS:PR00404 | PFscan:PS50066 | PANTHER:PTHR11945 |
| PANTHER:PTHR11945:SF164 | SMART:SM00432 | EnsemblPlantsGene:SORBI_3007G090412 | SUPFAM:SSF55455 | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf |
| UniParc:UPI0001A86F0C | RefSeq:XP_002446420.1 | SEG:seg | : | : | : |
Description
hypothetical protein
Coordinates
chr7:+:13176736..13177479
Molecular Weight (calculated)
27337.0 Da
IEP (calculated)
9.836
GRAVY (calculated)
-0.509
Length
247 amino acids
Sequence
(BLAST)
(BLAST)
001: MVNGKSTKGR QRIEMKSIKG EEARQVCFSK RRPCLFKKAC ELSTLCGAEV AVVTFSPGGR CFSFGHPSTL SVADSFLDEH TLNGLTIGSG SHGTQELTGT
101: NHQMNHQVME LQQLMEAEKR RKERAVEAMK RESRGPVMQL LNANVGALGL QELEVLRKDL YMVQDMVKER SREVLEDAMR ARRPPPQPRM HMVAMPSQSF
201: FGGQSAGTMY TTFPSLSNGQ SEGVHVNSLL HGSLGGRGNY FNGQFRG
101: NHQMNHQVME LQQLMEAEKR RKERAVEAMK RESRGPVMQL LNANVGALGL QELEVLRKDL YMVQDMVKER SREVLEDAMR ARRPPPQPRM HMVAMPSQSF
201: FGGQSAGTMY TTFPSLSNGQ SEGVHVNSLL HGSLGGRGNY FNGQFRG
001: MVRSTKGRQK IEMKKMENES NLQVTFSKRR FGLFKKASEL CTLSGAEILL IVFSPGGKVF SFGHPSVQEL IHRFSNPNHN SAIVHHQNNN LQLVETRPDR
101: NIQYLNNILT EVLANQEKEK QKRMVLDLLK ESREQVGNWY EKDVKDLDMN ETNQLISALQ DVKKKLVREM SQYSQVNVSQ NYFGQSSGVI GGGNVGIDLF
201: DQRRNAFNYN PNMVFPNHTP PMFGYNNDGV LVPISNMNYM SSYNFNQS
101: NIQYLNNILT EVLANQEKEK QKRMVLDLLK ESREQVGNWY EKDVKDLDMN ETNQLISALQ DVKKKLVREM SQYSQVNVSQ NYFGQSSGVI GGGNVGIDLF
201: DQRRNAFNYN PNMVFPNHTP PMFGYNNDGV LVPISNMNYM SSYNFNQS
Arabidopsis Description
MADS-box protein [Source:UniProtKB/TrEMBL;Acc:O23222]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.