Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| OQU80162 | Sorghum | nucleus | 94.81 | 81.38 |
| OQU75616 | Sorghum | nucleus | 89.15 | 76.52 |
| KXG24793 | Sorghum | nucleus | 77.36 | 66.4 |
| KXG24792 | Sorghum | nucleus | 75.47 | 64.78 |
| Zm00001d024389_P001 | Maize | nucleus | 73.58 | 61.9 |
| GSMUA_Achr5P26530_001 | Banana | mitochondrion, nucleus, plastid | 29.25 | 27.56 |
| GSMUA_Achr8P07230_001 | Banana | nucleus | 30.19 | 27.12 |
| KXG34713 | Sorghum | nucleus | 29.72 | 25.61 |
| EER88419 | Sorghum | nucleus | 24.53 | 24.19 |
| EES19977 | Sorghum | nucleus | 27.83 | 24.08 |
| KXG20143 | Sorghum | nucleus | 20.28 | 23.37 |
| KXG34716 | Sorghum | nucleus | 25.47 | 23.28 |
| KXG21744 | Sorghum | nucleus | 21.23 | 22.61 |
| EER96088 | Sorghum | nucleus | 25.0 | 21.54 |
| EER96091 | Sorghum | nucleus | 24.06 | 21.16 |
| EER89159 | Sorghum | nucleus | 22.64 | 20.96 |
| KXG29537 | Sorghum | nucleus | 25.0 | 16.99 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | UniProt:A0A1Z5R9Q7 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0046983 | InterPro:IPR002100 | InterPro:IPR036879 | EnsemblPlants:OQU80165 | ProteinID:OQU80165 |
| ProteinID:OQU80165.1 | PFAM:PF00319 | PRINTS:PR00404 | PFscan:PS50066 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF164 |
| SMART:SM00432 | EnsemblPlantsGene:SORBI_3007G090421 | SUPFAM:SSF55455 | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | UniParc:UPI00081AB564 |
| SEG:seg | : | : | : | : | : |
Description
hypothetical protein
Coordinates
chr7:+:13344217..13351320
Molecular Weight (calculated)
23099.8 Da
IEP (calculated)
8.848
GRAVY (calculated)
-0.312
Length
212 amino acids
Sequence
(BLAST)
(BLAST)
001: MVNGRSTKGR QRIEMKSIKG EEARQVCFSK RRPCLFKKAC ELSTLCGAEV AVCTFSRGGR CFSFGHPSTL PIADSFHDEH TLDGLTIGSG SHGSQGLTVE
101: AVMQLLNANV GALGLQELEV LRKDLYMVQD MVKERSREVL EDAMRARRPP PQPRMHMVAM PSQIFFGGQS AGTMYTTFPS LSNGQSEGVH VNSLLHGSLG
201: GRGNYFNGQF GG
101: AVMQLLNANV GALGLQELEV LRKDLYMVQD MVKERSREVL EDAMRARRPP PQPRMHMVAM PSQIFFGGQS AGTMYTTFPS LSNGQSEGVH VNSLLHGSLG
201: GRGNYFNGQF GG
001: MEDGEASTIT FLPTTEPKPL QNPNLLAKPK KETKQKKPKT TKGRQKIEIK EIMLETRRQV TFSKRRSGLF KKAAELSVLC GAQIGIITFS RCDRIYSFGN
101: VNSLIDKYLR KAPVMLRSHP GGNVANGEED NDGLMWWERA VESVPEEHME EYKNALSVLR ENLLTRIYQM SGDRTVENLP AFPNEMAMAD WKLTNENLMA
201: RNDRGYGGNN GDLEFAFMPQ NGRQ
101: VNSLIDKYLR KAPVMLRSHP GGNVANGEED NDGLMWWERA VESVPEEHME EYKNALSVLR ENLLTRIYQM SGDRTVENLP AFPNEMAMAD WKLTNENLMA
201: RNDRGYGGNN GDLEFAFMPQ NGRQ
Arabidopsis Description
At1g72350 [Source:UniProtKB/TrEMBL;Acc:Q9C9D4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.