CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG34716	Sorghum	nucleus	61.0	63.36
EER96088	Sorghum	nucleus	61.0	59.76
KXG34713	Sorghum	nucleus	57.68	56.5
Zm00001d019214_P001	Maize	nucleus	66.39	54.61
GSMUA_Achr8P07230_001	Banana	nucleus	29.05	29.66
GSMUA_Achr5P26530_001	Banana	mitochondrion, nucleus, plastid	26.97	28.89
EES19977	Sorghum	nucleus	28.63	28.16
OQU80165	Sorghum	nucleus	21.16	24.06
KXG21744	Sorghum	nucleus	19.09	23.12
OQU75616	Sorghum	nucleus	23.65	23.08
OQU80162	Sorghum	nucleus	22.41	21.86
KXG24792	Sorghum	nucleus	21.99	21.46
KXG20143	Sorghum	nucleus	16.18	21.2
KXG24793	Sorghum	nucleus	21.58	21.05
EER88419	Sorghum	nucleus	17.84	20.0
EER89159	Sorghum	nucleus	17.43	18.34
KXG29537	Sorghum	nucleus	22.41	17.31

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	EntrezGene:8069122	UniProt:C5XDF6	ncoils:Coil	EnsemblPlants:EER96091
ProteinID:EER96091	ProteinID:EER96091.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0046983	InterPro:IPR002100	InterPro:IPR036879	PFAM:PF00319	PRINTS:PR00404	PFscan:PS50066
PANTHER:PTHR11945	PANTHER:PTHR11945:SF361	SMART:SM00432	EnsemblPlantsGene:SORBI_3002G080700	SUPFAM:SSF55455	InterPro:TF_MADSbox
InterPro:TF_MADSbox_sf	UniParc:UPI0001A839C4	RefSeq:XP_002459570.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr2:+:8529299..8530335

Molecular Weight (calculated)

26776.6 Da

IEP (calculated)

4.134

GRAVY (calculated)

-0.410

Length

241 amino acids

Sequence
(BLAST)

001: MVKGEVKPIE NEEQRQICFT KRRQSLFNKA SEISILCGAM VGSIVFSTSG TPFSFGHPSI DDVAKRFLSS VISDGPSSSC ARNDYSWAVP DTIQLLNMEY
101: SELQQALVSE KEKKKMLQEA TKKEMDEPMM QLLNTNISEL SLEELQEFQK YLDAIHGVVE EKDTKMPETS QPQGLVPELP MEIAPDQQYK FGDEHNSANP
201: MAFTAPSSSD IEFIDGLFEV DGPCLSGDLA DVFGLGDFPD N

Best Arabidopsis Sequence Match ( AT2G24840.1 )
(BLAST)

001: MYVTKYKNKL PTLQVDLIIM PHQTQACIYK QTLSLHQIFQ QRKATKTLHT KKTMMSKKKE SIGRQKIPMV KIKKESHRQV TFSKRRAGLF KKASELCTLC
101: GAEIGIIVFS PAKKPFSFGH PSVESVLDRY VSRNNMSLAQ SQQLQGSPAA SCELNMQLTH ILSEVEEEKK KGQAMEEMRK ESVRRSMINW WEKPVEEMNM
201: VQLQEMKYAL EELRKTVVTN MASFNEAKDD VFGFLDNKVT VPPYVNMPSG PSNIYNFANG NGCF

Arabidopsis Description

AGL61Agamous-like MADS-box protein AGL61 [Source:UniProtKB/Swiss-Prot;Acc:Q4PSU4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.