Factsheet for Zm00001d019214_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 1
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	endoplasmic reticulum
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER96091	Sorghum	nucleus	54.61	66.39
Zm00001d019213_P001	Maize	nucleus	50.17	54.85
GSMUA_Achr8P07230_001	Banana	nucleus	25.6	31.78
GSMUA_Achr5P26530_001	Banana	mitochondrion, nucleus, plastid	24.23	31.56
Zm00001d039080_P001	Maize	nucleus	24.91	29.55
Zm00001d009628_P001	Maize	nucleus	24.91	29.44
Zm00001d024389_P001	Maize	nucleus	20.82	24.21
Zm00001d042550_P001	Maize	nucleus	14.33	22.34
Zm00001d007891_P001	Maize	nucleus	14.33	21.88
Zm00001d046053_P001	Maize	mitochondrion, plastid	14.68	17.48
Zm00001d046054_P001	Maize	mitochondrion, plastid	14.68	17.48
Zm00001d038015_P001	Maize	nucleus	17.75	17.16

Protein Annotations

EntrezGene:103633769	MapMan:15.5.14	Gene3D:3.40.1810.10	UniProt:A0A1D6HW69	ncoils:Coil	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0046983	InterPro:IPR002100	InterPro:IPR036879
ProteinID:ONM52473.1	PFAM:PF00319	PRINTS:PR00404	PFscan:PS50066	PANTHER:PTHR11945	PANTHER:PTHR11945:SF361
SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI000220F3A0	EnsemblPlantsGene:Zm00001d019214
EnsemblPlants:Zm00001d019214_P001	EnsemblPlants:Zm00001d019214_T001	SEG:seg	:	:	:

Description

MADS-transcription factor 75Agamous-like MADS-box protein AGL29

Coordinates

chr7:+:22114577..22115458

Molecular Weight (calculated)

30728.5 Da

IEP (calculated)

4.124

GRAVY (calculated)

-0.344

Length

293 amino acids

Sequence
(BLAST)

001: MVRGEMKPIE NEETRQICFT KRRQSLFNKA SELSILCGAM VGSVVFSTFG TPFSFGHPSI DDVANRFLSP PPPPPSDAPA ASSGGGAGAG ASGSSSNDGS
101: CSWAVTDTIR RLNSEYAELR QALDSESKKR ETLQEATGKE MGARMMQLLN ANVSELGLAE LLEFLECLEA VDGVVNNETA NKTTTTLDLE ATTTTSGGSS
201: QTRQGLVPQP PMETVVAPAP AAADLQYQLL GGEHSGAADP MAFAAPTTSW SSEFVVDGFE VDDPMHGGGG GGDDLHDVYY ALGDFPGDDQ NHG

Best Arabidopsis Sequence Match ( AT2G24840.1 )
(BLAST)

001: MYVTKYKNKL PTLQVDLIIM PHQTQACIYK QTLSLHQIFQ QRKATKTLHT KKTMMSKKKE SIGRQKIPMV KIKKESHRQV TFSKRRAGLF KKASELCTLC
101: GAEIGIIVFS PAKKPFSFGH PSVESVLDRY VSRNNMSLAQ SQQLQGSPAA SCELNMQLTH ILSEVEEEKK KGQAMEEMRK ESVRRSMINW WEKPVEEMNM
201: VQLQEMKYAL EELRKTVVTN MASFNEAKDD VFGFLDNKVT VPPYVNMPSG PSNIYNFANG NGCF

Arabidopsis Description

AGL61Agamous-like MADS-box protein AGL61 [Source:UniProtKB/Swiss-Prot;Acc:Q4PSU4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.