Factsheet for Zm00001d019213_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG34713	Sorghum	nucleus	70.52	76.83
Zm00001d019214_P001	Maize	nucleus	54.85	50.17
Zm00001d039080_P001	Maize	nucleus	34.33	37.25
Zm00001d009628_P001	Maize	nucleus	33.96	36.69
GSMUA_Achr5P26530_001	Banana	mitochondrion, nucleus, plastid	29.48	35.11
GSMUA_Achr8P07230_001	Banana	nucleus	30.6	34.75
Zm00001d024389_P001	Maize	nucleus	26.12	27.78
Zm00001d042550_P001	Maize	nucleus	16.79	23.94
Zm00001d007891_P001	Maize	nucleus	16.79	23.44
Zm00001d038015_P001	Maize	nucleus	22.39	19.8
Zm00001d046053_P001	Maize	mitochondrion, plastid	17.91	19.51
Zm00001d046054_P001	Maize	mitochondrion, plastid	17.91	19.51

Protein Annotations

EntrezGene:103633767	MapMan:15.5.14	Gene3D:3.40.1810.10	UniProt:A0A060CXH0	ProteinID:AIB05206.1	ncoils:Coil
GO:GO:0000977	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0045944
GO:GO:0046983	InterPro:IPR002100	InterPro:IPR036879	InterPro:MADS_MEF2-like	ProteinID:ONM52472.1	PFAM:PF00319
PRINTS:PR00404	PFscan:PS50066	PANTHER:PTHR11945	PANTHER:PTHR11945:SF164	SMART:SM00432	SUPFAM:SSF55455
InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI000220F391	EnsemblPlantsGene:Zm00001d019213	EnsemblPlants:Zm00001d019213_P001	EnsemblPlants:Zm00001d019213_T001
SEG:seg	:	:	:	:	:

Description

MADS-transcription factor 13Agamous-like MADS-box protein AGL29

Coordinates

chr7:+:22103625..22104431

Molecular Weight (calculated)

28525.9 Da

IEP (calculated)

8.651

GRAVY (calculated)

-0.391

Length

268 amino acids

Sequence
(BLAST)

001: MTRKKMEMKP IENEEARQVC FSKRRQGLFK KASELSILCG ATVGSVVFST SGRSYSFGHP SINDVADRFL SSVAPGGLAS GGASASHGGS GTTSGAVTDT
101: VHRLNMEYLE LQQSLDSEKK KKERLQEAAA KEMGGRVMQC LNANVFELGL AELQELQKWL EAVDGAVKEK ANRILAEARA RQTARGPSLV PQPPMEMDIA
201: STSRHLQSGT RHIGADSVAL SFAGPSSSNN GFVGGSPEVH DPLLIVSGGR LQDVCGLGSF PNNQKNHG

Best Arabidopsis Sequence Match ( AT2G24840.1 )
(BLAST)

001: MYVTKYKNKL PTLQVDLIIM PHQTQACIYK QTLSLHQIFQ QRKATKTLHT KKTMMSKKKE SIGRQKIPMV KIKKESHRQV TFSKRRAGLF KKASELCTLC
101: GAEIGIIVFS PAKKPFSFGH PSVESVLDRY VSRNNMSLAQ SQQLQGSPAA SCELNMQLTH ILSEVEEEKK KGQAMEEMRK ESVRRSMINW WEKPVEEMNM
201: VQLQEMKYAL EELRKTVVTN MASFNEAKDD VFGFLDNKVT VPPYVNMPSG PSNIYNFANG NGCF

Arabidopsis Description

AGL61Agamous-like MADS-box protein AGL61 [Source:UniProtKB/Swiss-Prot;Acc:Q4PSU4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.