Factsheet for Zm00001d038015_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG29537	Sorghum	nucleus	72.28	70.19
TraesCS6A01G138300.1	Wheat	nucleus	27.72	42.64
GSMUA_Achr5P26530_001	Banana	mitochondrion, nucleus, plastid	25.41	34.22
GSMUA_Achr8P07230_001	Banana	nucleus	25.41	32.63
Zm00001d039080_P001	Maize	nucleus	23.43	28.74
Zm00001d042550_P001	Maize	nucleus	17.16	27.66
Zm00001d009628_P001	Maize	nucleus	22.44	27.42
Zm00001d007891_P001	Maize	nucleus	16.5	26.04
Zm00001d024389_P001	Maize	nucleus	19.47	23.41
Zm00001d019213_P001	Maize	nucleus	19.8	22.39
Zm00001d046053_P001	Maize	mitochondrion, plastid	16.83	20.73
Zm00001d046054_P001	Maize	mitochondrion, plastid	16.83	20.73
Zm00001d019214_P001	Maize	nucleus	17.16	17.75

Protein Annotations

EntrezGene:103631497	MapMan:15.5.14	Gene3D:3.40.1810.10	UniProt:A0A1D6M2R5	ProteinID:AQK85474.1	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0046983	InterPro:IPR002100	InterPro:IPR036879
PFAM:PF00319	PRINTS:PR00404	PFscan:PS50066	PANTHER:PTHR11945	PANTHER:PTHR11945:SF266	SMART:SM00432
SUPFAM:SSF55455	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI000221B7B3	EnsemblPlantsGene:Zm00001d038015	EnsemblPlants:Zm00001d038015_P001
EnsemblPlants:Zm00001d038015_T001	SEG:seg	:	:	:	:

Description

MADS-transcription factor 58Putative MADS-box transcription factor family protein

Coordinates

chr6:+:145193067..145193978

Molecular Weight (calculated)

32119.9 Da

IEP (calculated)

6.831

GRAVY (calculated)

-0.244

Length

303 amino acids

Sequence
(BLAST)

001: MASEAETAGE RKRKKTLGRR KIEIKPIKCV EAKHVCFSKR REGLYKKANE LCALTGAKVA VIVSSPAGKP YSFGHPSVRA VLDRYLLDPG TAAHDAFDAP
101: PPPILREFDG QRERLCEAIA AEARRRDALD AAARAAGVWT DDVVRRAELP DLLAMLAALE RVRADADRAM RQHQCAAAAA AAAAADACYY DLANIASFTA
201: DEYGGAGSSS LHHQAAAVDV AHMAFLMGGD GVSHAPQPFG PMLLPAPDDL PPPAPLAFHY GSDHNHIAGY QGHAYDPGCG SGGGHGAAYE MEGWTTATCN
301: FFG

Best Arabidopsis Sequence Match ( AT2G24840.1 )
(BLAST)

001: MYVTKYKNKL PTLQVDLIIM PHQTQACIYK QTLSLHQIFQ QRKATKTLHT KKTMMSKKKE SIGRQKIPMV KIKKESHRQV TFSKRRAGLF KKASELCTLC
101: GAEIGIIVFS PAKKPFSFGH PSVESVLDRY VSRNNMSLAQ SQQLQGSPAA SCELNMQLTH ILSEVEEEKK KGQAMEEMRK ESVRRSMINW WEKPVEEMNM
201: VQLQEMKYAL EELRKTVVTN MASFNEAKDD VFGFLDNKVT VPPYVNMPSG PSNIYNFANG NGCF

Arabidopsis Description

AGL61Agamous-like MADS-box protein AGL61 [Source:UniProtKB/Swiss-Prot;Acc:Q4PSU4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.