Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plastid
Predictor Summary:
Predictor Summary:
- plastid 4
- mitochondrion 2
- nucleus 1
Predictors | GFP | MS/MS | Papers |
---|---|---|---|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
Zm00001d046053_P001 | Maize | mitochondrion, plastid | 100.0 | 100.0 |
EER88419 | Sorghum | nucleus | 73.98 | 84.65 |
TraesCS7D01G337200.1 | Wheat | plastid | 36.59 | 46.63 |
TraesCS1D01G062500.1 | Wheat | nucleus | 34.15 | 46.41 |
Zm00001d042550_P001 | Maize | nucleus | 35.37 | 46.28 |
TraesCS5B01G471900.1 | Wheat | mitochondrion | 32.52 | 46.24 |
TraesCS7B01G240500.1 | Wheat | plastid | 35.77 | 45.6 |
TraesCS1B01G080200.1 | Wheat | nucleus | 32.93 | 45.51 |
TraesCS7B01G240400.1 | Wheat | plastid | 36.18 | 45.41 |
TraesCS7B01G211300.1 | Wheat | plastid | 36.18 | 45.41 |
HORVU7Hr1G081190.1 | Barley | nucleus | 27.64 | 45.33 |
TraesCS5D01G474300.1 | Wheat | mitochondrion, nucleus, plastid | 31.71 | 45.09 |
Zm00001d007891_P001 | Maize | nucleus | 34.96 | 44.79 |
TraesCS7D01G337000.1 | Wheat | plastid | 35.37 | 44.39 |
Os06t0504100-00 | Rice | mitochondrion | 37.8 | 44.29 |
Os12t0407000-00 | Rice | mitochondrion | 34.55 | 43.81 |
HORVU5Hr1G110410.2 | Barley | nucleus | 32.93 | 41.75 |
GSMUA_Achr4P11900_001 | Banana | nucleus | 21.54 | 36.3 |
HORVU7Hr1G081070.1 | Barley | mitochondrion, nucleus | 36.99 | 34.08 |
HORVU5Hr1G110470.1 | Barley | plastid | 34.15 | 33.87 |
TraesCS1A01G013100.1 | Wheat | nucleus | 25.2 | 32.8 |
Bra026674.1-P | Field mustard | nucleus | 22.36 | 26.7 |
CDX81816 | Canola | nucleus | 21.95 | 26.21 |
CDY21751 | Canola | nucleus | 21.95 | 26.21 |
Zm00001d039080_P001 | Maize | nucleus | 26.02 | 25.91 |
VIT_07s0005g06590.t01 | Wine grape | nucleus | 21.14 | 24.76 |
VIT_10s0003g03970.t01 | Wine grape | nucleus | 21.14 | 24.76 |
Zm00001d009628_P001 | Maize | nucleus | 24.8 | 24.6 |
CDX72908 | Canola | nucleus | 20.33 | 23.47 |
AT1G17310.2 | Thale cress | nucleus | 21.54 | 23.25 |
CDY50644 | Canola | cytosol, mitochondrion, nucleus | 19.92 | 23.11 |
CDX68270 | Canola | cytosol, nucleus, plastid | 19.92 | 23.11 |
Zm00001d024389_P001 | Maize | nucleus | 23.58 | 23.02 |
Bra003884.1-P | Field mustard | cytosol | 19.51 | 22.64 |
Solyc11g069770.1.1 | Tomato | nucleus | 16.26 | 22.1 |
AT1G72350.1 | Thale cress | nucleus | 19.92 | 21.88 |
PGSC0003DMT400002920 | Potato | nucleus | 13.82 | 19.32 |
Zm00001d019213_P001 | Maize | nucleus | 19.51 | 17.91 |
Zm00001d038015_P001 | Maize | nucleus | 20.73 | 16.83 |
KRH06269 | Soybean | nucleus | 16.26 | 15.75 |
KRH47706 | Soybean | nucleus | 16.26 | 15.69 |
KRH47701 | Soybean | nucleus | 17.48 | 15.14 |
Zm00001d019214_P001 | Maize | nucleus | 17.48 | 14.68 |
KRH47704 | Soybean | nucleus | 16.67 | 14.29 |
Protein Annotations
EntrezGene:100282117 | MapMan:15.5.14 | Gene3D:3.40.1810.10 | ProteinID:AIB05163.1 | ProteinID:AQL03683.1 | ProteinID:AQL03684.1 |
GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0046983 | InterPro:IPR002100 |
InterPro:IPR036879 | UniProt:K7VDU8 | PFAM:PF00319 | PRINTS:PR00404 | PFscan:PS50066 | PANTHER:PTHR11945 |
PANTHER:PTHR11945:SF339 | SMART:SM00432 | SUPFAM:SSF55455 | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | UniParc:UPI0002221481 |
EnsemblPlantsGene:Zm00001d046054 | EnsemblPlants:Zm00001d046054_P001 | EnsemblPlants:Zm00001d046054_T001 | : | : | : |
Description
MADS-box transcription factor family protein
Coordinates
chr9:+:60326844..60327986
Molecular Weight (calculated)
27136.0 Da
IEP (calculated)
11.032
GRAVY (calculated)
-0.437
Length
246 amino acids
Sequence
(BLAST)
(BLAST)
001: MAYIAFVLPT QIRGGPRANQ LRLQEVEQRP PPRAMVKPGK RTSRGRQKIE IRRIDNKESR QVTQCKRKGG LLKKASELHL LCGAQVAIIV FKRRDPERKE
101: VPVPPRGQRD DGGLAFAMGT PSVDHVLHRC GLLHADEGLT AIQDVGAIAA ERAVMEARAG QTEQTRALVE AEKARNDAIG QKVLQAVEVT GRRFWWEVDV
201: GVLGEAELPV FTSQLQRLRD SVRLQANKSR TSATPAGVAA PWLPLG
101: VPVPPRGQRD DGGLAFAMGT PSVDHVLHRC GLLHADEGLT AIQDVGAIAA ERAVMEARAG QTEQTRALVE AEKARNDAIG QKVLQAVEVT GRRFWWEVDV
201: GVLGEAELPV FTSQLQRLRD SVRLQANKSR TSATPAGVAA PWLPLG
001: MVKKSKGRQK IEMVKMKNES NLQVTFSKRR SGLFKKASEL CTLCGAEVAI VVFSPGRKVF SFGHPNVDSV IDRFINNNPL PPHQHNNMQL RETRRNSIVQ
101: DLNNHLTQVL SQLETEKKKY DELKKIREKT KALGNWWEDP VEELALSQLE GFKGNLENLK KVVTVEASRF FQANVPNFYV GSSSNNAAFG IDDGSHINPD
201: MDLFSQRRMM DINAFNYNQN QIHPNHALPP FGNNAYGINE GFVPEYNVNF RPEYNPNQNQ IQNQNQVQIQ IQNQSFKREN ISEYEHHHGY PPQSRSDYY
101: DLNNHLTQVL SQLETEKKKY DELKKIREKT KALGNWWEDP VEELALSQLE GFKGNLENLK KVVTVEASRF FQANVPNFYV GSSSNNAAFG IDDGSHINPD
201: MDLFSQRRMM DINAFNYNQN QIHPNHALPP FGNNAYGINE GFVPEYNVNF RPEYNPNQNQ IQNQNQVQIQ IQNQSFKREN ISEYEHHHGY PPQSRSDYY
Arabidopsis Description
AGL62Agamous-like MADS-box protein AGL62 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKK2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.