Factsheet for Zm00001d024389_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG24793	Sorghum	nucleus	75.79	77.33
OQU75616	Sorghum	nucleus	75.79	77.33
KXG24792	Sorghum	nucleus	73.41	74.9
OQU80162	Sorghum	nucleus	72.62	74.09
OQU80165	Sorghum	nucleus	61.9	73.58
GSMUA_Achr5P26530_001	Banana	mitochondrion, nucleus, plastid	27.78	31.11
Zm00001d042550_P001	Maize	nucleus	22.62	30.32
Zm00001d007891_P001	Maize	nucleus	23.02	30.21
GSMUA_Achr8P07230_001	Banana	nucleus	26.98	28.81
Zm00001d039080_P001	Maize	nucleus	27.78	28.34
Zm00001d009628_P001	Maize	nucleus	26.98	27.42
Zm00001d019213_P001	Maize	nucleus	27.78	26.12
Zm00001d046053_P001	Maize	mitochondrion, plastid	23.02	23.58
Zm00001d046054_P001	Maize	mitochondrion, plastid	23.02	23.58
Zm00001d019214_P001	Maize	nucleus	24.21	20.82
Zm00001d038015_P001	Maize	nucleus	23.41	19.47

Protein Annotations

EntrezGene:103642500	MapMan:15.5.14	Gene3D:3.40.1810.10	ProteinID:AIB05203.1	ProteinID:AQK41102.1	ncoils:Coil
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0046983	InterPro:IPR002100
InterPro:IPR036879	UniProt:K7TQ96	PFAM:PF00319	PRINTS:PR00404	PFscan:PS50066	PANTHER:PTHR11945
PANTHER:PTHR11945:SF164	SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI000221ECA7
EnsemblPlantsGene:Zm00001d024389	EnsemblPlants:Zm00001d024389_P001	EnsemblPlants:Zm00001d024389_T001	SEG:seg	:	:

Description

MADS-transcription factor 33Putative MADS-box transcription factor family protein

Coordinates

chr10:-:68369718..68370476

Molecular Weight (calculated)

27810.7 Da

IEP (calculated)

10.189

GRAVY (calculated)

-0.432

Length

252 amino acids

Sequence
(BLAST)

001: MVKVVKSTKG RQRIEMKCIQ GEEARQVCFS KRRPSLFKKA SELSTLCGAE VAVVTFSPGG KCFSFGHPST SSVTDRFLAV HTLDDGRAMA SGSHGSRRGL
101: TDTSHAMNQQ LMELQRFMET EKRRKERAME AMVRESGGPV MQLLSANVGA LGIRELEELR KELCMVENMV KERAREVLRD AMQTRRLPPQ SHVHMALPSQ
201: VPFGGQRAGT MYANFSSLSN NGPREGLHVN SMLHGFGLGG LGDYYLNGQF GG

Best Arabidopsis Sequence Match ( AT5G60440.1 )
(BLAST)

001: MVKKSKGRQK IEMVKMKNES NLQVTFSKRR SGLFKKASEL CTLCGAEVAI VVFSPGRKVF SFGHPNVDSV IDRFINNNPL PPHQHNNMQL RETRRNSIVQ
101: DLNNHLTQVL SQLETEKKKY DELKKIREKT KALGNWWEDP VEELALSQLE GFKGNLENLK KVVTVEASRF FQANVPNFYV GSSSNNAAFG IDDGSHINPD
201: MDLFSQRRMM DINAFNYNQN QIHPNHALPP FGNNAYGINE GFVPEYNVNF RPEYNPNQNQ IQNQNQVQIQ IQNQSFKREN ISEYEHHHGY PPQSRSDYY

Arabidopsis Description

AGL62Agamous-like MADS-box protein AGL62 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKK2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.