CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG24792	Sorghum	nucleus	93.52	93.52
OQU75616	Sorghum	nucleus	81.38	81.38
OQU80162	Sorghum	nucleus	79.35	79.35
OQU80165	Sorghum	nucleus	66.4	77.36
Zm00001d024389_P001	Maize	nucleus	77.33	75.79
GSMUA_Achr5P26530_001	Banana	mitochondrion, nucleus, plastid	29.55	32.44
KXG21744	Sorghum	nucleus	23.48	29.15
GSMUA_Achr8P07230_001	Banana	nucleus	27.53	28.81
KXG20143	Sorghum	nucleus	21.05	28.26
EES19977	Sorghum	nucleus	27.53	27.76
EER88419	Sorghum	nucleus	22.67	26.05
KXG34713	Sorghum	nucleus	25.91	26.02
EER89159	Sorghum	nucleus	22.67	24.45
KXG34716	Sorghum	nucleus	22.67	24.14
EER96088	Sorghum	nucleus	22.67	22.76
EER96091	Sorghum	nucleus	21.05	21.58
KXG29537	Sorghum	nucleus	23.89	18.91

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	UniProt:A0A1B6PGI1	ncoils:Coil	GO:GO:0000977	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0045944	GO:GO:0046983	InterPro:IPR002100
InterPro:IPR036879	EnsemblPlants:KXG24793	ProteinID:KXG24793	ProteinID:KXG24793.1	InterPro:MADS_MEF2-like	PFAM:PF00319
PRINTS:PR00404	PFscan:PS50066	PANTHER:PTHR11945	PANTHER:PTHR11945:SF164	SMART:SM00432	EnsemblPlantsGene:SORBI_3007G086200
SUPFAM:SSF55455	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI00081ABE96	SEG:seg	:

Description

hypothetical protein

Coordinates

chr7:-:11383927..11384670

Molecular Weight (calculated)

27060.7 Da

IEP (calculated)

9.020

GRAVY (calculated)

-0.507

Length

247 amino acids

Sequence
(BLAST)

001: MVKGKSTKGR QRIEMKRIKG EEARQVCFSK RRPSLFKKAS ELSTLCGAEV AVVTFSPGGK CWSFGHPSTL SVADRFLAEH TLNGLTIGSE SHGTQGLTGI
101: SHEMNQQVME LQQLMETEKR RKEKLVEAMD RESGGPVMQL LNANVSALGI HELEQLRKEI CMVQDMVKER SREMLQDAMQ TRRLPPQSPM HMAAMPSQVL
201: SGDQRAGTMY TTVPSSSSGP CEGLHVSSLL HGSHGGLGNY SNGQYGG

Best Arabidopsis Sequence Match ( AT5G60440.1 )
(BLAST)

001: MVKKSKGRQK IEMVKMKNES NLQVTFSKRR SGLFKKASEL CTLCGAEVAI VVFSPGRKVF SFGHPNVDSV IDRFINNNPL PPHQHNNMQL RETRRNSIVQ
101: DLNNHLTQVL SQLETEKKKY DELKKIREKT KALGNWWEDP VEELALSQLE GFKGNLENLK KVVTVEASRF FQANVPNFYV GSSSNNAAFG IDDGSHINPD
201: MDLFSQRRMM DINAFNYNQN QIHPNHALPP FGNNAYGINE GFVPEYNVNF RPEYNPNQNQ IQNQNQVQIQ IQNQSFKREN ISEYEHHHGY PPQSRSDYY

Arabidopsis Description

AGL62Agamous-like MADS-box protein AGL62 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKK2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.