CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG34716	Sorghum	nucleus	79.27	84.05
KXG34713	Sorghum	nucleus	71.14	71.14
EER96091	Sorghum	nucleus	59.76	61.0
EES19977	Sorghum	nucleus	34.96	35.1
GSMUA_Achr5P26530_001	Banana	mitochondrion, nucleus, plastid	31.71	34.67
GSMUA_Achr8P07230_001	Banana	nucleus	31.3	32.63
KXG20143	Sorghum	nucleus	19.92	26.63
KXG21744	Sorghum	nucleus	21.14	26.13
OQU80165	Sorghum	nucleus	21.54	25.0
KXG24792	Sorghum	nucleus	23.58	23.48
OQU75616	Sorghum	nucleus	23.17	23.08
EER88419	Sorghum	nucleus	19.92	22.79
KXG24793	Sorghum	nucleus	22.76	22.67
OQU80162	Sorghum	nucleus	22.36	22.27
EER89159	Sorghum	nucleus	19.11	20.52
KXG29537	Sorghum	nucleus	24.8	19.55

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	EntrezGene:8078449	UniProt:C5XDF2	ncoils:Coil	EnsemblPlants:EER96088
ProteinID:EER96088	ProteinID:EER96088.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0046983	InterPro:IPR002100	InterPro:IPR002487	InterPro:IPR036879	PFAM:PF00319
PRINTS:PR00404	PFscan:PS50066	PFscan:PS51297	PANTHER:PTHR11945	PANTHER:PTHR11945:SF361	SMART:SM00432
EnsemblPlantsGene:SORBI_3002G080500	SUPFAM:SSF55455	InterPro:TF_Kbox	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI0001A839C1
RefSeq:XP_002459567.1	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr2:+:8474348..8475455

Molecular Weight (calculated)

26861.6 Da

IEP (calculated)

4.778

GRAVY (calculated)

-0.426

Length

246 amino acids

Sequence
(BLAST)

001: MERRKIEIKP IENENARQVC FSKRRQGLFK KASEISILCG AMVGSVVFSS FGKSFSFGHP SIDDVVNRFL NLVTPDGPAS SGANHDNSLA VTGTVQGLNM
101: EYLELQQSLD SLKKKNERLQ EATKKEMGEH MMQWLNANIL ELGLDELQDF QKLLEAIDGV VKEKENNIVV EARETQGSAT QPHMEIASAS QSQFGEHISA
201: NSMASAAPSS SNGFIDGFEV NDPLLGGGDL YDICAPGNFP NNQNHG

Best Arabidopsis Sequence Match ( AT2G24840.1 )
(BLAST)

001: MYVTKYKNKL PTLQVDLIIM PHQTQACIYK QTLSLHQIFQ QRKATKTLHT KKTMMSKKKE SIGRQKIPMV KIKKESHRQV TFSKRRAGLF KKASELCTLC
101: GAEIGIIVFS PAKKPFSFGH PSVESVLDRY VSRNNMSLAQ SQQLQGSPAA SCELNMQLTH ILSEVEEEKK KGQAMEEMRK ESVRRSMINW WEKPVEEMNM
201: VQLQEMKYAL EELRKTVVTN MASFNEAKDD VFGFLDNKVT VPPYVNMPSG PSNIYNFANG NGCF

Arabidopsis Description

AGL61Agamous-like MADS-box protein AGL61 [Source:UniProtKB/Swiss-Prot;Acc:Q4PSU4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.