CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d038015_P001	Maize	nucleus	70.19	72.28
TraesCS6A01G138300.1	Wheat	nucleus	27.24	43.15
GSMUA_Achr5P26530_001	Banana	mitochondrion, nucleus, plastid	25.0	34.67
GSMUA_Achr8P07230_001	Banana	nucleus	23.72	31.36
EES19977	Sorghum	nucleus	23.08	29.39
KXG21744	Sorghum	nucleus	16.35	25.63
KXG20143	Sorghum	nucleus	15.06	25.54
OQU80165	Sorghum	nucleus	16.99	25.0
KXG34716	Sorghum	nucleus	18.59	25.0
EER96088	Sorghum	nucleus	19.55	24.8
KXG34713	Sorghum	nucleus	19.55	24.8
OQU75616	Sorghum	nucleus	19.23	24.29
KXG24793	Sorghum	nucleus	18.91	23.89
KXG24792	Sorghum	nucleus	18.59	23.48
OQU80162	Sorghum	nucleus	18.27	23.08
EER88419	Sorghum	nucleus	15.71	22.79
EER89159	Sorghum	nucleus	16.67	22.71
EER96091	Sorghum	nucleus	17.31	22.41

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	UniProt:A0A194YMV9	GO:GO:0000977	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0045944	GO:GO:0046983	InterPro:IPR002100	InterPro:IPR036879
EnsemblPlants:KXG29537	ProteinID:KXG29537	ProteinID:KXG29537.1	InterPro:MADS_MEF2-like	PFAM:PF00319	PRINTS:PR00404
PFscan:PS50066	PANTHER:PTHR11945	PANTHER:PTHR11945:SF266	SMART:SM00432	EnsemblPlantsGene:SORBI_3004G051500	SUPFAM:SSF55455
InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI0007F21924	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr4:+:4159814..4160752

Molecular Weight (calculated)

32959.8 Da

IEP (calculated)

5.947

GRAVY (calculated)

-0.290

Length

312 amino acids

Sequence
(BLAST)

001: MVLGEAGGGG GGERKRKKTL GRRKIEIKPI KCMEARHVCF SKRRDGLYKK ASELCALTGA KVALIVFSPA GKPYSFGHPS VSAVVDRYLD PDLPGSAAND
101: VSEAPTTTMY EFDGQRDRLC EAIAAEARRK DALDAAARAA GVWTDDVVRQ AEMPELVAML AALERVKDDA DHAMRQHQCA AAAAGACDVC YYDLGSDGTF
201: TADEYGGASS GSHHHQQAAM DAQTMALLMG GNVVTHAAAH APTMMMLPPP DLQPPAAAAR VPLSFNYGTD HNHVTGYEGY AYDLGDGGGQ GGAAYETEGC
301: YFGPTATCNF FG

Best Arabidopsis Sequence Match ( AT4G36590.1 )
(BLAST)

001: MVRSTKGRQK IEMKKMENES NLQVTFSKRR FGLFKKASEL CTLSGAEILL IVFSPGGKVF SFGHPSVQEL IHRFSNPNHN SAIVHHQNNN LQLVETRPDR
101: NIQYLNNILT EVLANQEKEK QKRMVLDLLK ESREQVGNWY EKDVKDLDMN ETNQLISALQ DVKKKLVREM SQYSQVNVSQ NYFGQSSGVI GGGNVGIDLF
201: DQRRNAFNYN PNMVFPNHTP PMFGYNNDGV LVPISNMNYM SSYNFNQS

Arabidopsis Description

MADS-box protein [Source:UniProtKB/TrEMBL;Acc:O23222]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.