Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX68270 | Canola | cytosol, nucleus, plastid | 98.58 | 98.58 |
| AT1G72350.1 | Thale cress | nucleus | 67.45 | 63.84 |
| Bra026674.1-P | Field mustard | nucleus | 45.28 | 46.6 |
| GSMUA_Achr4P11900_001 | Banana | nucleus | 20.75 | 30.14 |
| Os12t0407000-00 | Rice | mitochondrion | 25.94 | 28.35 |
| Bra032057.1-P | Field mustard | nucleus | 22.64 | 26.67 |
| Os06t0504100-00 | Rice | mitochondrion | 26.42 | 26.67 |
| TraesCS1B01G080200.1 | Wheat | nucleus | 21.7 | 25.84 |
| KXG20143 | Sorghum | nucleus | 22.17 | 25.54 |
| TraesCS5B01G471900.1 | Wheat | mitochondrion | 20.75 | 25.43 |
| Zm00001d042550_P001 | Maize | nucleus | 22.17 | 25.0 |
| Zm00001d007891_P001 | Maize | nucleus | 22.64 | 25.0 |
| TraesCS5D01G474300.1 | Wheat | mitochondrion, nucleus, plastid | 20.28 | 24.86 |
| HORVU7Hr1G081190.1 | Barley | nucleus | 17.45 | 24.67 |
| KXG21744 | Sorghum | nucleus | 23.11 | 24.62 |
| TraesCS1D01G062500.1 | Wheat | nucleus | 20.75 | 24.31 |
| TraesCS7D01G337200.1 | Wheat | plastid | 21.7 | 23.83 |
| TraesCS7A01G342300.1 | Wheat | plastid | 21.7 | 23.35 |
| TraesCS7B01G240500.1 | Wheat | plastid | 21.23 | 23.32 |
| TraesCS1A01G013100.1 | Wheat | nucleus | 20.75 | 23.28 |
| HORVU5Hr1G110410.2 | Barley | nucleus | 21.23 | 23.2 |
| TraesCS7B01G211300.1 | Wheat | plastid | 21.23 | 22.96 |
| TraesCS7D01G337000.1 | Wheat | plastid | 21.23 | 22.96 |
| VIT_07s0005g06590.t01 | Wine grape | nucleus | 22.64 | 22.86 |
| VIT_10s0003g03970.t01 | Wine grape | nucleus | 22.64 | 22.86 |
| TraesCS7A01G342600.1 | Wheat | nucleus, plastid | 21.23 | 22.84 |
| Bra021910.1-P | Field mustard | nucleus | 19.34 | 22.53 |
| TraesCS7B01G240400.1 | Wheat | plastid | 20.75 | 22.45 |
| Bra001209.1-P | Field mustard | nucleus | 18.87 | 22.35 |
| TraesCS1A01G061800.1 | Wheat | nucleus | 17.92 | 22.22 |
| Bra007829.1-P | Field mustard | nucleus | 21.7 | 22.22 |
| Bra026764.1-P | Field mustard | nucleus | 16.98 | 21.43 |
| EER89159 | Sorghum | nucleus | 22.64 | 20.96 |
| EER88419 | Sorghum | nucleus | 20.75 | 20.47 |
| PGSC0003DMT400002920 | Potato | nucleus | 16.98 | 20.45 |
| Zm00001d046053_P001 | Maize | mitochondrion, plastid | 22.64 | 19.51 |
| Zm00001d046054_P001 | Maize | mitochondrion, plastid | 22.64 | 19.51 |
| Solyc11g069770.1.1 | Tomato | nucleus | 16.51 | 19.34 |
| Bra032347.1-P | Field mustard | nucleus | 16.51 | 18.82 |
| HORVU5Hr1G110470.1 | Barley | plastid | 21.23 | 18.15 |
| Bra022434.1-P | Field mustard | nucleus | 23.11 | 17.31 |
| HORVU7Hr1G081070.1 | Barley | mitochondrion, nucleus | 21.7 | 17.23 |
| Bra011938.1-P | Field mustard | nucleus | 18.87 | 16.81 |
| Bra002480.1-P | Field mustard | nucleus | 21.7 | 16.49 |
| KRH06269 | Soybean | nucleus | 19.34 | 16.14 |
| Bra020242.1-P | Field mustard | nucleus | 18.87 | 16.13 |
| KRH47706 | Soybean | nucleus | 18.87 | 15.69 |
| Bra038225.1-P | Field mustard | nucleus | 18.87 | 15.33 |
| KRH47701 | Soybean | nucleus | 18.87 | 14.08 |
| KRH47704 | Soybean | nucleus | 18.4 | 13.59 |
| Bra020247.1-P | Field mustard | cytosol | 16.04 | 12.64 |
| Bra035685.1-P | Field mustard | nucleus | 16.51 | 11.95 |
| Bra022446.1-P | Field mustard | cytosol | 6.6 | 7.14 |
| Bra020245.1-P | Field mustard | nucleus | 2.36 | 3.57 |
| Bra020246.1-P | Field mustard | cytosol | 2.83 | 3.53 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | EnsemblPlantsGene:Bra003884 | EnsemblPlants:Bra003884.1 | EnsemblPlants:Bra003884.1-P | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0046983 | InterPro:IPR002100 | InterPro:IPR036879 |
| UniProt:M4CI51 | PFAM:PF00319 | PRINTS:PR00404 | PFscan:PS50066 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF185 |
| SMART:SM00432 | SUPFAM:SSF55455 | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | UniParc:UPI000254180B | SEG:seg |
Description
AT1G72350 (E=2e-060) | MADS-box protein (AGL60)
Coordinates
chrA07:+:15543891..15544529
Molecular Weight (calculated)
24161.1 Da
IEP (calculated)
8.177
GRAVY (calculated)
-0.643
Length
212 amino acids
Sequence
(BLAST)
(BLAST)
001: MENGEASLIT CLPFKEQKPM QKPNLAVKQR NGRKQQNPKT TKGRQRIEIK EIQEENRRQV TFSKRRTGLF KKAAELSVLC GAQIGIITFS RCERIYVFGN
101: VNTLIESYLR KTPVMLRSYY GGDVAAGVDG DGPMWWERAV ESVPEEEMDE YMKGLNGLRE NLWTRICEMG GDPTVQMNAQ ICPDLMAPVN WKLMDENLAV
201: RNDQGQAGYD GY
101: VNTLIESYLR KTPVMLRSYY GGDVAAGVDG DGPMWWERAV ESVPEEEMDE YMKGLNGLRE NLWTRICEMG GDPTVQMNAQ ICPDLMAPVN WKLMDENLAV
201: RNDQGQAGYD GY
001: MEDGEASTIT FLPTTEPKPL QNPNLLAKPK KETKQKKPKT TKGRQKIEIK EIMLETRRQV TFSKRRSGLF KKAAELSVLC GAQIGIITFS RCDRIYSFGN
101: VNSLIDKYLR KAPVMLRSHP GGNVANGEED NDGLMWWERA VESVPEEHME EYKNALSVLR ENLLTRIYQM SGDRTVENLP AFPNEMAMAD WKLTNENLMA
201: RNDRGYGGNN GDLEFAFMPQ NGRQ
101: VNSLIDKYLR KAPVMLRSHP GGNVANGEED NDGLMWWERA VESVPEEHME EYKNALSVLR ENLLTRIYQM SGDRTVENLP AFPNEMAMAD WKLTNENLMA
201: RNDRGYGGNN GDLEFAFMPQ NGRQ
Arabidopsis Description
At1g72350 [Source:UniProtKB/TrEMBL;Acc:Q9C9D4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.