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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 5
  • cytosol 1
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, mitochondrion, nucleus
BaCelLo:nucleus
EpiLoc:nucleus
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
Bra009436.1-P
Bra009911.1-P
Bra020524.1-P
Bra020525.1-P
Bra020550.1-P
Bra020552.1-P
Bra029469.1-P

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G60440.1 Bra009911.1-P AT1G31630.1 15805477
AT5G60440.1 Bra020524.1-P AT1G31630.1 15805477
AT5G60440.1 Bra020525.1-P AT1G31630.1 15805477
AT5G60440.1 Bra020550.1-P AT1G31630.1 15805477
AT5G60440.1 Bra020552.1-P AT1G31630.1 15805477
AT5G60440.1 Bra009911.1-P AT1G31640.1 15805477
AT5G60440.1 Bra020524.1-P AT1G31640.1 15805477
AT5G60440.1 Bra020525.1-P AT1G31640.1 15805477
AT5G60440.1 Bra020550.1-P AT1G31640.1 15805477
AT5G60440.1 Bra020552.1-P AT1G31640.1 15805477
AT5G60440.1 Bra009436.1-P AT1G46408.1 15805477
AT5G60440.1 Bra009911.1-P AT1G65300.1 15805477
AT5G60440.1 Bra020524.1-P AT1G65300.1 15805477
AT5G60440.1 Bra020525.1-P AT1G65300.1 15805477
AT5G60440.1 Bra020550.1-P AT1G65300.1 15805477
AT5G60440.1 Bra020552.1-P AT1G65300.1 15805477
AT5G60440.1 Bra009911.1-P AT1G65330.1 15805477
AT5G60440.1 Bra020524.1-P AT1G65330.1 15805477
AT5G60440.1 Bra020525.1-P AT1G65330.1 15805477
AT5G60440.1 Bra020550.1-P AT1G65330.1 15805477
AT5G60440.1 Bra020552.1-P AT1G65330.1 15805477
AT5G60440.1 Bra009911.1-P AT5G26650.1 15805477
AT5G60440.1 Bra020524.1-P AT5G26650.1 15805477
AT5G60440.1 Bra020525.1-P AT5G26650.1 15805477
AT5G60440.1 Bra020550.1-P AT5G26650.1 15805477
AT5G60440.1 Bra020552.1-P AT5G26650.1 15805477
AT5G60440.1 Bra009911.1-P AT5G27960.1 15805477
AT5G60440.1 Bra020524.1-P AT5G27960.1 15805477
AT5G60440.1 Bra020525.1-P AT5G27960.1 15805477
AT5G60440.1 Bra020550.1-P AT5G27960.1 15805477
AT5G60440.1 Bra020552.1-P AT5G27960.1 15805477
AT5G60440.1 Bra029469.1-P AT5G48670.1 15805477
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra020246.1-P Field mustard cytosol 78.57 64.71
CDY28567 Canola mitochondrion, nucleus 94.29 53.23
Bra020242.1-P Field mustard nucleus 92.14 52.02
Bra020247.1-P Field mustard cytosol 70.0 36.43
Bra022446.1-P Field mustard cytosol 32.86 23.47
Bra002480.1-P Field mustard nucleus 36.43 18.28
Bra038225.1-P Field mustard nucleus 30.71 16.48
Bra022434.1-P Field mustard nucleus 32.14 15.9
AT5G60440.1 Thale cress nucleus 32.14 15.05
KRH32908 Soybean nucleus 9.29 14.44
Bra026764.1-P Field mustard nucleus 17.14 14.29
KRG91148 Soybean nucleus 23.57 13.64
VIT_03s0088g00550.t01 Wine grape nucleus 20.0 13.15
KRG91147 Soybean nucleus 22.14 12.97
VIT_03s0088g00510.t01 Wine grape nucleus 20.0 12.5
KRH35629 Soybean nucleus 18.57 12.32
VIT_03s0088g00600.t01 Wine grape nucleus 18.57 12.15
KRH35628 Soybean nucleus 20.71 11.74
PGSC0003DMT400013136 Potato nucleus 16.43 11.68
KRH35627 Soybean mitochondrion 20.0 11.34
KRH72146 Soybean nucleus 15.0 11.05
Bra011938.1-P Field mustard nucleus 17.86 10.5
Bra021910.1-P Field mustard nucleus 13.57 10.44
KRH32873 Soybean nucleus 15.71 10.14
KRG91149 Soybean mitochondrion 17.14 9.92
KRH28025 Soybean nucleus 11.43 9.52
KRH72149 Soybean mitochondrion 11.43 9.47
Bra001209.1-P Field mustard nucleus 10.71 8.38
GSMUA_Achr5P01940_001 Banana nucleus 14.29 8.2
Bra035685.1-P Field mustard nucleus 17.14 8.19
Bra032057.1-P Field mustard nucleus 10.0 7.78
Bra007829.1-P Field mustard nucleus 11.43 7.73
KRH32912 Soybean nucleus 9.29 7.51
KRH32946 Soybean nucleus 9.29 7.51
KRH32916 Soybean nucleus 9.29 7.51
KRH32915 Soybean nucleus 9.29 7.51
KRH32909 Soybean nucleus 9.29 7.51
KRH32904 Soybean nucleus 9.29 7.51
KRH32901 Soybean nucleus 9.29 7.51
KRH32900 Soybean nucleus 9.29 7.51
KRH32910 Soybean nucleus 9.29 7.3
KRH32917 Soybean nucleus 9.29 7.3
KRH22644 Soybean nucleus 7.14 7.19
KRG88448 Soybean nucleus 8.57 6.94
KRH71935 Soybean nucleus 8.57 6.78
GSMUA_Achr5P01990_001 Banana nucleus 16.43 6.63
GSMUA_Achr4P28260_001 Banana nucleus 11.43 6.5
KRH72042 Soybean extracellular 4.29 5.83
Bra032347.1-P Field mustard nucleus 7.14 5.38
KRH33030 Soybean nucleus 2.86 3.54
Bra026674.1-P Field mustard nucleus 3.57 2.43
Bra003884.1-P Field mustard cytosol 3.57 2.36
Solyc04g025050.1.1 Tomato golgi, mitochondrion, nucleus, plastid 0.0 0.0
VIT_01s0010g01500.t01 Wine grape nucleus 0.0 0.0
Protein Annotations
EnsemblPlants:Bra020245.1EnsemblPlants:Bra020245.1-PEnsemblPlantsGene:Bra020245SEG:segUniParc:UPI0002543580UniProt:M4DUQ2
MapMan:35.2:::::
Description
AT5G60440 (E=3e-010) AGL62 | AGL62 (Agamous-like 62); DNA binding / transcription factor
Coordinates
chrA02:-:5836553..5836975
Molecular Weight (calculated)
15600.3 Da
IEP (calculated)
9.500
GRAVY (calculated)
-0.966
Length
140 amino acids
Sequence
(BLAST)
001: MKNLESEQKT NEELKKLRKK SKLPEIWLKE SIGGLDLGQA KEFKGKLENL KKQVIYEAFK SFQATPFPQP GFYGGSSSNA PFGVDGNVNV FDNHNMVLSN
101: HPSPFVPGFN HNMALPSHPN PNESGNKHPH DGHPPQPRSD
Best Arabidopsis Sequence Match ( AT5G60440.1 )
(BLAST)
001: MVKKSKGRQK IEMVKMKNES NLQVTFSKRR SGLFKKASEL CTLCGAEVAI VVFSPGRKVF SFGHPNVDSV IDRFINNNPL PPHQHNNMQL RETRRNSIVQ
101: DLNNHLTQVL SQLETEKKKY DELKKIREKT KALGNWWEDP VEELALSQLE GFKGNLENLK KVVTVEASRF FQANVPNFYV GSSSNNAAFG IDDGSHINPD
201: MDLFSQRRMM DINAFNYNQN QIHPNHALPP FGNNAYGINE GFVPEYNVNF RPEYNPNQNQ IQNQNQVQIQ IQNQSFKREN ISEYEHHHGY PPQSRSDYY
Arabidopsis Description
AGL62Agamous-like MADS-box protein AGL62 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKK2]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.