Factsheet for Bra009436.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000392.1-P
Bra002480.1-P
Bra002611.1-P
Bra004007.1-P
Bra004071.1-P
Bra004361.1-P
Bra004927.1-P
Bra007138.1-P
Bra007139.1-P
Bra009911.1-P
Bra012564.1-P
Bra013364.1-P
Bra015129.1-P
Bra017376.1-P
Bra018741.1-P
Bra018767.1-P
Bra020242.1-P
Bra020245.1-P
Bra020246.1-P
Bra020247.1-P
Bra020524.1-P
Bra020525.1-P
Bra020550.1-P
Bra020552.1-P
Bra020923.1-P
Bra022341.1-P
Bra025126.1-P
Bra025607.1-P
Bra025609.1-P
Bra025619.1-P
Bra026543.1-P
Bra028019.1-P
Bra028020.1-P
Bra031864.1-P
Bra037571.1-P
Bra038326.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G46408.1	Bra009911.1-P	AT1G65330.1	15805477
AT1G46408.1	Bra020524.1-P	AT1G65330.1	15805477
AT1G46408.1	Bra020525.1-P	AT1G65330.1	15805477
AT1G46408.1	Bra020550.1-P	AT1G65330.1	15805477
AT1G46408.1	Bra020552.1-P	AT1G65330.1	15805477
AT1G46408.1	Bra004007.1-P	AT1G69120.1	15805477
AT1G46408.1	Bra004361.1-P	AT1G69120.1	15805477
AT1G46408.1	Bra038326.1-P	AT1G69120.1	15805477
AT1G46408.1	Bra017376.1-P	AT2G03710.1	15805477
AT1G46408.1	Bra025126.1-P	AT2G03710.1	15805477
AT1G46408.1	Bra026543.1-P	AT2G03710.1	15805477
AT1G46408.1	Bra000392.1-P	AT2G45650.1	15805477
AT1G46408.1	Bra004927.1-P	AT2G45650.1	15805477
AT1G46408.1	Bra022341.1-P	AT3G18650.1	15805477
AT1G46408.1	Bra037571.1-P	AT3G18650.1	15805477
AT1G46408.1	Bra031864.1-P	AT4G11250.1	15805477
AT1G46408.1	Bra012564.1-P	AT4G18960.1	15805477
AT1G46408.1	Bra013364.1-P	AT4G18960.1	15805477
AT1G46408.1	Bra004071.1-P	AT5G27070.1	15805477
AT1G46408.1	Bra007138.1-P	AT5G27070.1	15805477
AT1G46408.1	Bra007139.1-P	AT5G27070.1	15805477
AT1G46408.1	Bra015129.1-P	AT5G27070.1	15805477
AT1G46408.1	Bra018741.1-P	AT5G27070.1	15805477
AT1G46408.1	Bra018767.1-P	AT5G27070.1	15805477
AT1G46408.1	Bra020923.1-P	AT5G27070.1	15805477
AT1G46408.1	Bra028019.1-P	AT5G27070.1	15805477
AT1G46408.1	Bra028020.1-P	AT5G27070.1	15805477
AT1G46408.1	Bra004071.1-P	AT5G27580.1	15805477
AT1G46408.1	Bra007138.1-P	AT5G27580.1	15805477
AT1G46408.1	Bra007139.1-P	AT5G27580.1	15805477
AT1G46408.1	Bra015129.1-P	AT5G27580.1	15805477
AT1G46408.1	Bra018741.1-P	AT5G27580.1	15805477
AT1G46408.1	Bra018767.1-P	AT5G27580.1	15805477
AT1G46408.1	Bra020923.1-P	AT5G27580.1	15805477
AT1G46408.1	Bra028019.1-P	AT5G27580.1	15805477
AT1G46408.1	Bra028020.1-P	AT5G27580.1	15805477
AT1G46408.1	Bra009911.1-P	AT5G27960.1	15805477
AT1G46408.1	Bra020524.1-P	AT5G27960.1	15805477
AT1G46408.1	Bra020525.1-P	AT5G27960.1	15805477
AT1G46408.1	Bra020550.1-P	AT5G27960.1	15805477
AT1G46408.1	Bra020552.1-P	AT5G27960.1	15805477
AT1G46408.1	Bra025607.1-P	AT5G38740.1	15805477
AT1G46408.1	Bra025609.1-P	AT5G38740.1	15805477
AT1G46408.1	Bra025619.1-P	AT5G38740.1	15805477
AT1G46408.1	Bra025607.1-P	AT5G40120.1	15805477
AT1G46408.1	Bra025609.1-P	AT5G40120.1	15805477
AT1G46408.1	Bra025619.1-P	AT5G40120.1	15805477
AT1G46408.1	Bra025607.1-P	AT5G40220.1	15805477
AT1G46408.1	Bra025609.1-P	AT5G40220.1	15805477
AT1G46408.1	Bra025619.1-P	AT5G40220.1	15805477
AT1G46408.1	Bra002611.1-P	AT5G58890.1	15805477
AT1G46408.1	Bra002480.1-P	AT5G60440.1	15805477
AT1G46408.1	Bra020242.1-P	AT5G60440.1	15805477
AT1G46408.1	Bra020245.1-P	AT5G60440.1	15805477
AT1G46408.1	Bra020246.1-P	AT5G60440.1	15805477
AT1G46408.1	Bra020247.1-P	AT5G60440.1	15805477
AT1G46408.1	Bra031864.1-P	AT5G65330.1	15805477
AT5G04640.1	Bra009911.1-P	AT1G65330.1	15805477
AT5G04640.1	Bra020524.1-P	AT1G65330.1	15805477
AT5G04640.1	Bra020525.1-P	AT1G65330.1	15805477
AT5G04640.1	Bra020550.1-P	AT1G65330.1	15805477
AT5G04640.1	Bra020552.1-P	AT1G65330.1	15805477
AT5G04640.1	Bra022341.1-P	AT3G18650.1	15805477
AT5G04640.1	Bra037571.1-P	AT3G18650.1	15805477
AT5G04640.1	Bra031864.1-P	AT4G11250.1	15805477
AT5G04640.1	Bra025607.1-P	AT5G38740.1	15805477
AT5G04640.1	Bra025609.1-P	AT5G38740.1	15805477
AT5G04640.1	Bra025619.1-P	AT5G38740.1	15805477
AT5G04640.1	Bra025607.1-P	AT5G40120.1	15805477
AT5G04640.1	Bra025609.1-P	AT5G40120.1	15805477
AT5G04640.1	Bra025619.1-P	AT5G40120.1	15805477
AT5G04640.1	Bra025607.1-P	AT5G40220.1	15805477
AT5G04640.1	Bra025609.1-P	AT5G40220.1	15805477
AT5G04640.1	Bra025619.1-P	AT5G40220.1	15805477
AT5G04640.1	Bra002611.1-P	AT5G58890.1	15805477
AT5G04640.1	Bra031864.1-P	AT5G65330.1	15805477

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX70208	Canola	nucleus	47.71	72.64
CDY44873	Canola	nucleus	45.75	69.65
Bra040965.1-P	Field mustard	nucleus	26.14	40.4
Bra027116.1-P	Field mustard	nucleus	26.47	33.33
Bra018727.1-P	Field mustard	nucleus	26.14	32.65
Bra014217.1-P	Field mustard	nucleus	28.1	31.05
AT1G46408.1	Thale cress	nucleus	26.8	30.83
Bra037434.1-P	Field mustard	nucleus	26.14	30.65
AT5G04640.1	Thale cress	nucleus	29.09	27.64
Bra033492.1-P	Field mustard	nucleus	23.53	24.57
Bra010027.1-P	Field mustard	nucleus	25.16	22.32
Bra032767.1-P	Field mustard	nucleus	19.61	19.42
Bra020600.1-P	Field mustard	nucleus	14.05	16.35

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	EnsemblPlantsGene:Bra009436	EnsemblPlants:Bra009436.1	EnsemblPlants:Bra009436.1-P	ncoils:Coil
GO:GO:0000982	GO:GO:0000987	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0045944	GO:GO:0046983	InterPro:IPR002100	InterPro:IPR036879	UniProt:M4CYY9
InterPro:MADS_SRF-like	PFAM:PF00319	PFscan:PS50066	PANTHER:PTHR11945	PANTHER:PTHR11945:SF277	SMART:SM00432
SUPFAM:SSF55455	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI0002547879	SEG:seg	:

Description

AT5G04640 (E=2e-040) AGL99 | AGL99 (AGAMOUS-LIKE 99); DNA binding / transcription factor

Coordinates

chrA10:-:16635920..16636840

Molecular Weight (calculated)

33849.0 Da

IEP (calculated)

4.550

GRAVY (calculated)

-0.671

Length

306 amino acids

Sequence
(BLAST)

001: MGGLKRKIPT DKKIERKESK SVAFSKRRKG LFSKTAQLCV LSGAQVAILA TPPCSKSNVS FYSFGHSSVD NVVSAFLKDQ YPREDHLGSE FWWEDKRLAE
101: SEDPKELSEA VDSISRMMQN LKGLRSKALA NREDAKKKKK EVVFDQSQTL NFQSAGASSS YIHEDQPENL QGLVKIFKEE DQKVAVSDKN NNNNKDVIQG
201: THQELDGDQA LGFESYLASL CIQDVSPENV EGFVNNSEIA TSSDSNNNNN GLLENLDGFD QVINLDDDFF DFEMNSEGFI TTNLEMNVAS TNGYSCAGSG
301: SEDGAY

Best Arabidopsis Sequence Match ( AT5G04640.1 )
(BLAST)

001: MGGVKRKISI ELIEKKDSRA VAFSKRSRGL YSKASDLCLL SDAQIAIIAT PVSSKSNVSF YTFGHSSVDN VVAAFLTNQR PREGLGLDYW WEDERLSKSE
101: DLEELRDAMD SMSKMLKDLK DLQNQRDCEE DVKKKGVLHG THQKQTFNPE SCSVNFDGFN KNTEEFDLDE IFDYVSTAEA LSMNLDMDDV SVVTTNQNPV
201: SASETVEDRE LVVHKNMDED NIHVSDMDDK DTMLMISDKN NVLPENLDEF DQELDLDQLL DFETNYESLL KSCEMEDYAS MVTTKQNLCS NPEAVEDGGL
301: MIQKDLPEDN LCFSDYFSDL HC

Arabidopsis Description

AGL99AGAMOUS-like 99 [Source:UniProtKB/TrEMBL;Acc:Q9LZ61]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.