Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY44873 | Canola | nucleus | 26.4 | 42.29 |
| CDX70208 | Canola | nucleus | 25.78 | 41.29 |
| AT1G46408.1 | Thale cress | nucleus | 32.92 | 39.85 |
| AT1G60920.1 | Thale cress | nucleus | 22.36 | 37.7 |
| AT1G60880.1 | Thale cress | nucleus | 22.67 | 36.32 |
| AT5G49420.1 | Thale cress | nucleus | 31.99 | 30.84 |
| Bra009436.1-P | Field mustard | nucleus | 27.64 | 29.09 |
| AT5G49490.1 | Thale cress | nucleus | 24.53 | 27.72 |
| AT5G38620.1 | Thale cress | nucleus | 29.19 | 26.93 |
| AT5G27130.1 | Thale cress | nucleus | 15.53 | 16.34 |
| AT1G48150.1 | Thale cress | nucleus | 15.22 | 15.17 |
| AT1G50780.1 | Thale cress | extracellular, vacuole | 10.25 | 10.22 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | EntrezGene:830341 | UniProt:A0A178UP04 | ProteinID:AED90768.1 | Symbol:AGL99 |
| ArrayExpress:AT5G04640 | EnsemblPlantsGene:AT5G04640 | RefSeq:AT5G04640 | TAIR:AT5G04640 | RefSeq:AT5G04640-TAIR-G | EnsemblPlants:AT5G04640.1 |
| TAIR:AT5G04640.1 | ProteinID:CAB85570.1 | ncoils:Coil | EMBL:DQ056669 | GO:GO:0000982 | GO:GO:0000987 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0045944 |
| GO:GO:0046983 | InterPro:IPR002100 | InterPro:IPR036879 | InterPro:MADS_SRF-like | RefSeq:NP_196084.1 | ProteinID:OAO94712.1 |
| PFAM:PF00319 | PO:PO:0020090 | PRINTS:PR00404 | PFscan:PS50066 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF185 |
| UniProt:Q9LZ61 | SMART:SM00432 | SUPFAM:SSF55455 | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | UniParc:UPI00000A61E5 |
| SEG:seg | : | : | : | : | : |
Description
AGL99AGAMOUS-like 99 [Source:UniProtKB/TrEMBL;Acc:Q9LZ61]
Coordinates
chr5:+:1332759..1333922
Molecular Weight (calculated)
36555.4 Da
IEP (calculated)
4.095
GRAVY (calculated)
-0.596
Length
322 amino acids
Sequence
(BLAST)
(BLAST)
001: MGGVKRKISI ELIEKKDSRA VAFSKRSRGL YSKASDLCLL SDAQIAIIAT PVSSKSNVSF YTFGHSSVDN VVAAFLTNQR PREGLGLDYW WEDERLSKSE
101: DLEELRDAMD SMSKMLKDLK DLQNQRDCEE DVKKKGVLHG THQKQTFNPE SCSVNFDGFN KNTEEFDLDE IFDYVSTAEA LSMNLDMDDV SVVTTNQNPV
201: SASETVEDRE LVVHKNMDED NIHVSDMDDK DTMLMISDKN NVLPENLDEF DQELDLDQLL DFETNYESLL KSCEMEDYAS MVTTKQNLCS NPEAVEDGGL
301: MIQKDLPEDN LCFSDYFSDL HC
101: DLEELRDAMD SMSKMLKDLK DLQNQRDCEE DVKKKGVLHG THQKQTFNPE SCSVNFDGFN KNTEEFDLDE IFDYVSTAEA LSMNLDMDDV SVVTTNQNPV
201: SASETVEDRE LVVHKNMDED NIHVSDMDDK DTMLMISDKN NVLPENLDEF DQELDLDQLL DFETNYESLL KSCEMEDYAS MVTTKQNLCS NPEAVEDGGL
301: MIQKDLPEDN LCFSDYFSDL HC
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.