Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT1G48150.1 | Thale cress | nucleus | 44.77 | 42.41 |
| CDY50584 | Canola | nucleus | 34.31 | 39.92 |
| CDY25046 | Canola | nucleus | 33.33 | 38.78 |
| Bra020600.1-P | Field mustard | nucleus | 33.01 | 38.4 |
| AT1G50780.1 | Thale cress | extracellular, vacuole | 34.31 | 32.51 |
| AT1G60920.1 | Thale cress | nucleus | 14.38 | 23.04 |
| AT1G60880.1 | Thale cress | nucleus | 13.73 | 20.9 |
| AT5G04640.1 | Thale cress | nucleus | 16.34 | 15.53 |
| AT1G46408.1 | Thale cress | nucleus | 12.42 | 14.29 |
| AT5G49490.1 | Thale cress | nucleus | 11.76 | 12.63 |
| AT5G49420.1 | Thale cress | nucleus | 13.73 | 12.57 |
| AT5G38620.1 | Thale cress | nucleus | 13.4 | 11.75 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | EntrezGene:832771 | ProteinID:AED93653.1 | Symbol:AGL39 | ArrayExpress:AT5G27130 |
| EnsemblPlantsGene:AT5G27130 | RefSeq:AT5G27130 | TAIR:AT5G27130 | RefSeq:AT5G27130-TAIR-G | EnsemblPlants:AT5G27130.1 | TAIR:AT5G27130.1 |
| Unigene:At.30824 | UniProt:F4K2U3 | GO:GO:0000982 | GO:GO:0000987 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0045944 | GO:GO:0046983 | InterPro:IPR002100 |
| InterPro:IPR036879 | InterPro:MADS_SRF-like | RefSeq:NP_198065.2 | PFAM:PF00319 | PFscan:PS50066 | PANTHER:PTHR11945 |
| PANTHER:PTHR11945:SF277 | SMART:SM00432 | SUPFAM:SSF55455 | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | UniParc:UPI0000196F0B |
| SEG:seg | : | : | : | : | : |
Description
AGL39AGAMOUS-like 39 [Source:UniProtKB/TrEMBL;Acc:F4K2U3]
Coordinates
chr5:+:9546547..9547553
Molecular Weight (calculated)
34354.4 Da
IEP (calculated)
4.219
GRAVY (calculated)
-0.608
Length
306 amino acids
Sequence
(BLAST)
(BLAST)
001: MPSSDSTMMK KGTKRKIEIK KRETKEQRAV TCSKRRQTVF SKAADLCLIS GANIAVFVTS PSDSSDVVYS FSGYSSAYEI ADCYLNRKPP PKIVNPAGSK
101: LGFWWEDPDL YHSCDDLSEL SIIEDRLQRM KKHVMACLEK EEKSQLVSSF DQNPNSTCSL DVEDCDGSSY SQIASTFTPN SVNEYCSDQT FSSFHGDQNP
201: NLSSPSFDQD CYSSLYQICG ESSSQVASFD QNPSSEIQGF ETEEEINQIN LLLQETQTEA NVNLDDEICF WNDLSNDDVF GLNSYFGLDN TNAMINFGDS
301: DFRRHV
101: LGFWWEDPDL YHSCDDLSEL SIIEDRLQRM KKHVMACLEK EEKSQLVSSF DQNPNSTCSL DVEDCDGSSY SQIASTFTPN SVNEYCSDQT FSSFHGDQNP
201: NLSSPSFDQD CYSSLYQICG ESSSQVASFD QNPSSEIQGF ETEEEINQIN LLLQETQTEA NVNLDDEICF WNDLSNDDVF GLNSYFGLDN TNAMINFGDS
301: DFRRHV
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.