Factsheet for Bra020600.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000392.1-P
Bra002611.1-P
Bra003919.1-P
Bra004007.1-P
Bra004361.1-P
Bra004927.1-P
Bra007972.1-P
Bra009174.1-P
Bra009176.1-P
Bra009199.1-P
Bra009911.1-P
Bra011021.1-P
Bra012564.1-P
Bra013364.1-P
Bra014454.1-P
Bra016128.1-P
Bra016129.1-P
Bra017376.1-P
Bra019436.1-P
Bra020524.1-P
Bra020525.1-P
Bra020550.1-P
Bra020552.1-P
Bra022341.1-P
Bra025126.1-P
Bra025607.1-P
Bra025609.1-P
Bra025619.1-P
Bra026543.1-P
Bra027116.1-P
Bra028282.1-P
Bra028730.1-P
Bra029155.1-P
Bra031864.1-P
Bra037571.1-P
Bra038326.1-P
Bra040965.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G48150.1	Bra011021.1-P	AT1G26310.1	15805477
AT1G48150.1	Bra027116.1-P	AT1G60880.1	15805477
AT1G48150.1	Bra040965.1-P	AT1G60880.1	15805477
AT1G48150.1	Bra027116.1-P	AT1G60920.1	15805477
AT1G48150.1	Bra040965.1-P	AT1G60920.1	15805477
AT1G48150.1	Bra004007.1-P	AT1G69120.1	15805477
AT1G48150.1	Bra004361.1-P	AT1G69120.1	15805477
AT1G48150.1	Bra038326.1-P	AT1G69120.1	15805477
AT1G48150.1	Bra003919.1-P	AT1G71692.1	15805477
AT1G48150.1	Bra007972.1-P	AT1G71692.1	15805477
AT1G48150.1	Bra016128.1-P	AT1G71692.1	15805477
AT1G48150.1	Bra016129.1-P	AT1G71692.1	15805477
AT1G48150.1	Bra017376.1-P	AT2G03710.1	15805477
AT1G48150.1	Bra025126.1-P	AT2G03710.1	15805477
AT1G48150.1	Bra026543.1-P	AT2G03710.1	15805477
AT1G48150.1	Bra000392.1-P	AT2G45650.1	15805477
AT1G48150.1	Bra004927.1-P	AT2G45650.1	15805477
AT1G48150.1	Bra022341.1-P	AT3G18650.1	15805477
AT1G48150.1	Bra037571.1-P	AT3G18650.1	15805477
AT1G48150.1	Bra019436.1-P	AT3G44460.1	15805477
AT1G48150.1	Bra014454.1-P	AT3G61120.1	15805477
AT1G48150.1	Bra031864.1-P	AT4G11250.1	15805477
AT1G48150.1	Bra012564.1-P	AT4G18960.1	15805477
AT1G48150.1	Bra013364.1-P	AT4G18960.1	15805477
AT1G48150.1	Bra009174.1-P	AT5G06500.1	15805477
AT1G48150.1	Bra009176.1-P	AT5G06500.1	15805477
AT1G48150.1	Bra009199.1-P	AT5G06500.1	15805477
AT1G48150.1	Bra028730.1-P	AT5G06500.1	15805477
AT1G48150.1	Bra009911.1-P	AT5G27960.1	15805477
AT1G48150.1	Bra020524.1-P	AT5G27960.1	15805477
AT1G48150.1	Bra020525.1-P	AT5G27960.1	15805477
AT1G48150.1	Bra020550.1-P	AT5G27960.1	15805477
AT1G48150.1	Bra020552.1-P	AT5G27960.1	15805477
AT1G48150.1	Bra025607.1-P	AT5G38740.1	15805477
AT1G48150.1	Bra025609.1-P	AT5G38740.1	15805477
AT1G48150.1	Bra025619.1-P	AT5G38740.1	15805477
AT1G48150.1	Bra025607.1-P	AT5G40220.1	15805477
AT1G48150.1	Bra025609.1-P	AT5G40220.1	15805477
AT1G48150.1	Bra025619.1-P	AT5G40220.1	15805477
AT1G48150.1	Bra028282.1-P	AT5G51860.1	15805477
AT1G48150.1	Bra029155.1-P	AT5G51860.1	15805477
AT1G48150.1	Bra002611.1-P	AT5G58890.1	15805477
AT1G48150.1	Bra031864.1-P	AT5G65330.1	15805477
AT5G27130.1	Bra009911.1-P	AT1G65330.1	15805477
AT5G27130.1	Bra020524.1-P	AT1G65330.1	15805477
AT5G27130.1	Bra020525.1-P	AT1G65330.1	15805477
AT5G27130.1	Bra020550.1-P	AT1G65330.1	15805477
AT5G27130.1	Bra020552.1-P	AT1G65330.1	15805477
AT5G27130.1	Bra004007.1-P	AT1G69120.1	15805477
AT5G27130.1	Bra004361.1-P	AT1G69120.1	15805477
AT5G27130.1	Bra038326.1-P	AT1G69120.1	15805477
AT5G27130.1	Bra000392.1-P	AT2G45650.1	15805477
AT5G27130.1	Bra004927.1-P	AT2G45650.1	15805477
AT5G27130.1	Bra022341.1-P	AT3G18650.1	15805477
AT5G27130.1	Bra037571.1-P	AT3G18650.1	15805477
AT5G27130.1	Bra031864.1-P	AT4G11250.1	15805477
AT5G27130.1	Bra012564.1-P	AT4G18960.1	15805477
AT5G27130.1	Bra013364.1-P	AT4G18960.1	15805477
AT5G27130.1	Bra025607.1-P	AT5G38740.1	15805477
AT5G27130.1	Bra025609.1-P	AT5G38740.1	15805477
AT5G27130.1	Bra025619.1-P	AT5G38740.1	15805477
AT5G27130.1	Bra002611.1-P	AT5G58890.1	15805477
AT5G27130.1	Bra031864.1-P	AT5G65330.1	15805477

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY25046	Canola	nucleus	98.48	98.48
CDY50584	Canola	nucleus	88.59	88.59
AT1G48150.1	Thale cress	nucleus	40.68	33.13
AT5G27130.1	Thale cress	nucleus	38.4	33.01
AT1G50780.1	Thale cress	extracellular, vacuole	30.04	24.46
Bra040965.1-P	Field mustard	nucleus	15.59	20.71
Bra018727.1-P	Field mustard	nucleus	17.11	18.37
Bra014217.1-P	Field mustard	nucleus	16.73	15.88
Bra027116.1-P	Field mustard	nucleus	14.45	15.64
Bra037434.1-P	Field mustard	nucleus	15.21	15.33
Bra009436.1-P	Field mustard	nucleus	16.35	14.05
Bra010027.1-P	Field mustard	nucleus	17.49	13.33
Bra033492.1-P	Field mustard	nucleus	11.03	9.9
Bra032767.1-P	Field mustard	nucleus	10.27	8.74

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	EnsemblPlantsGene:Bra020600	EnsemblPlants:Bra020600.1	EnsemblPlants:Bra020600.1-P	GO:GO:0000982
GO:GO:0000987	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0045944	GO:GO:0046983	InterPro:IPR002100	InterPro:IPR036879	UniProt:M4DVQ6	InterPro:MADS_SRF-like
PFAM:PF00319	PRINTS:PR00404	PFscan:PS50066	PANTHER:PTHR11945	PANTHER:PTHR11945:SF164	SMART:SM00432
SUPFAM:SSF55455	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI00025468DD	SEG:seg	:

Description

AT5G27130 (E=1e-041) AGL39 | AGL39 (AGAMOUS LIKE 39); DNA binding / transcription factor

Coordinates

chrA02:+:24284488..24285279

Molecular Weight (calculated)

29127.8 Da

IEP (calculated)

4.425

GRAVY (calculated)

-0.652

Length

263 amino acids

Sequence
(BLAST)

001: MARGGTKRKI EIKKRETKEQ RAVAYSKRRK TLFSKSAELC CLSGANIAVF VTSPGDKPNV ASSFSGHASA SEIVDCYFNG TLPPKISGPE SKSGFWWTDP
101: DLYSSCDDLS QLDVIEDLIK RTKKDLMDCL EKQEKSRVCC FDSHQNPNSS SQAVTMYQNT SKPLDGSSQV IYGGESSSGQ SRYLVNKDVG NCLWETKKEN
201: NLIMSVPQET EQTQSIINVD GGDEGQSFWD ELCDEDMFGL NNGEDDVMID IGEFLNEIES GES

Best Arabidopsis Sequence Match ( AT1G48150.1 )
(BLAST)

001: MQSSNVTDCT MRKRGTKRKI EIEKRMTKQQ RSVACSKRRP TLFSKAADLC LLSGANIAVF VTSPDENSDV VYSFSGYSHA SEIVDCYLNN KSPPKTTINP
101: ESAKFWWEEP DLYRDCDDLS ELRIIEDRLM RTKKHLMDYL EKKEKSHSVS KSDQNPNNDS GSSSSSSQIA SDFGQNPSTL SPSSLKIVSF DQNSYSSLEP
201: SSQVTTCFDQ NPVFSVGSES SSDQSRYLVN EDSGFVDGLL CETEEENNGM RLPQETQTQP MFTEEDQSFW ENLDVDDVFG LFKDDNNLEV PLQDHSSTNE
301: DDELLIDISE YLSEEAMECP CFS

Arabidopsis Description

F21D18.12 [Source:UniProtKB/TrEMBL;Acc:Q9LNG8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.