Factsheet for Bra027116.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000214.1-P
Bra020600.1-P
Bra022341.1-P
Bra031864.1-P
Bra037571.1-P
Bra039723.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G60880.1	Bra020600.1-P	AT1G48150.1	15805477
AT1G60880.1	Bra022341.1-P	AT3G18650.1	15805477
AT1G60880.1	Bra037571.1-P	AT3G18650.1	15805477
AT1G60880.1	Bra031864.1-P	AT4G11250.1	15805477
AT1G60880.1	Bra031864.1-P	AT5G65330.1	15805477
AT1G60920.1	Bra020600.1-P	AT1G48150.1	15805477
AT1G60920.1	Bra000214.1-P	AT2G41100.1	17360592
AT1G60920.1	Bra022341.1-P	AT3G18650.1	15805477
AT1G60920.1	Bra037571.1-P	AT3G18650.1	15805477
AT1G60920.1	Bra031864.1-P	AT4G11250.1	15805477
AT1G60920.1	Bra039723.1-P	AT4G14640.1	17360592
AT1G60920.1	Bra031864.1-P	AT5G65330.1	15805477

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY12872	Canola	nucleus	99.59	93.8
AT1G60920.1	Thale cress	nucleus	44.86	57.07
Bra040965.1-P	Field mustard	nucleus	44.44	54.55
AT1G60880.1	Thale cress	nucleus	41.15	49.75
Bra018727.1-P	Field mustard	nucleus	29.63	29.39
Bra014217.1-P	Field mustard	nucleus	31.69	27.8
Bra009436.1-P	Field mustard	nucleus	33.33	26.47
Bra037434.1-P	Field mustard	nucleus	27.98	26.05
Bra033492.1-P	Field mustard	nucleus	24.28	20.14
Bra010027.1-P	Field mustard	nucleus	27.57	19.42
Bra032767.1-P	Field mustard	nucleus	22.22	17.48
Bra020600.1-P	Field mustard	nucleus	15.64	14.45

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	EnsemblPlantsGene:Bra027116	EnsemblPlants:Bra027116.1	EnsemblPlants:Bra027116.1-P	GO:GO:0000982
GO:GO:0000987	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0045944	GO:GO:0046983	InterPro:IPR002100	InterPro:IPR036879	UniProt:M4EEA4	InterPro:MADS_SRF-like
PFAM:PF00319	PRINTS:PR00404	PFscan:PS50066	PANTHER:PTHR11945	PANTHER:PTHR11945:SF277	SMART:SM00432
SUPFAM:SSF55455	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI0002542662	SEG:seg	:

Description

AT1G60920 (E=5e-051) agl55 | agl55 (AGAMOUS-LIKE 55); DNA binding / transcription factor

Coordinates

chrA09:+:8581570..8582301

Molecular Weight (calculated)

27091.5 Da

IEP (calculated)

5.036

GRAVY (calculated)

-0.610

Length

243 amino acids

Sequence
(BLAST)

001: MGGEKRKIDI KFIEDKAVRS VTFCKRREGL FSKASELCLL SPTTQIAILA TPPSTNSHAG FYSFGHSSVD HVVSSLLHDQ SPGDPTNQVE NRRLGFWWED
101: QALERLESVD ELRDATDAVT RMLNNVRLRL DAVKGNQRGG ALVIHQEDAR APKIRNTNKE KTNQITNSES ANSGLVIHQD EVPQLCNTNT NYKNEETTTQ
201: VANSEGASGS GSSVEKNDDV LHIDDLDIDD FFIDFKLDPL FKF

Best Arabidopsis Sequence Match ( AT1G60920.1 )
(BLAST)

001: MGGTKRKIEM KRIEDKNVRA VAFTKRKSGL FHKASELCLL SPGTQIAILA TPLSSHSHAS FYSFGHSSVD HVVSSLLHNQ HPSLPTNQDN RSGLGFWWED
101: QAFDRLENVD ELKEAVDAVS RMLNNVRLRL DDAVKSNQRD GSLVIHQEDE EVLQLGYKDT NQITKLEGET SASASLLKNV VDNLHIDDRY Y

Arabidopsis Description

AGL55AGAMOUS-like 55 [Source:UniProtKB/TrEMBL;Acc:Q9C960]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.