Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT1G60880.1 | Thale cress | nucleus | 62.83 | 59.7 |
| Bra040965.1-P | Field mustard | nucleus | 57.07 | 55.05 |
| CDY54756 | Canola | nucleus | 57.07 | 55.05 |
| Bra027116.1-P | Field mustard | nucleus | 57.07 | 44.86 |
| CDY40477 | Canola | nucleus | 55.5 | 42.91 |
| CDY12872 | Canola | nucleus | 57.59 | 42.64 |
| AT1G46408.1 | Thale cress | nucleus | 37.17 | 26.69 |
| AT5G49490.1 | Thale cress | nucleus | 35.08 | 23.51 |
| AT5G04640.1 | Thale cress | nucleus | 37.7 | 22.36 |
| AT5G49420.1 | Thale cress | nucleus | 37.7 | 21.56 |
| AT5G38620.1 | Thale cress | nucleus | 35.6 | 19.48 |
| AT5G27130.1 | Thale cress | nucleus | 23.04 | 14.38 |
| AT1G48150.1 | Thale cress | nucleus | 19.37 | 11.46 |
| AT1G50780.1 | Thale cress | extracellular, vacuole | 14.14 | 8.36 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | EntrezGene:842383 | ProteinID:AAG51643.1 | ProteinID:AEE33748.1 | Symbol:AGL55 |
| ArrayExpress:AT1G60920 | EnsemblPlantsGene:AT1G60920 | RefSeq:AT1G60920 | TAIR:AT1G60920 | RefSeq:AT1G60920-TAIR-G | EnsemblPlants:AT1G60920.1 |
| TAIR:AT1G60920.1 | ncoils:Coil | GO:GO:0000982 | GO:GO:0000987 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0045944 | GO:GO:0046983 | InterPro:IPR002100 |
| InterPro:IPR036879 | InterPro:MADS_SRF-like | RefSeq:NP_176288.1 | PFAM:PF00319 | PO:PO:0020090 | PRINTS:PR00404 |
| PFscan:PS50066 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF277 | UniProt:Q9C960 | SMART:SM00432 | SUPFAM:SSF55455 |
| InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | UniParc:UPI00000AAA9B | SEG:seg | : | : |
Description
AGL55AGAMOUS-like 55 [Source:UniProtKB/TrEMBL;Acc:Q9C960]
Coordinates
chr1:-:22429692..22430361
Molecular Weight (calculated)
21502.2 Da
IEP (calculated)
6.605
GRAVY (calculated)
-0.548
Length
191 amino acids
Sequence
(BLAST)
(BLAST)
001: MGGTKRKIEM KRIEDKNVRA VAFTKRKSGL FHKASELCLL SPGTQIAILA TPLSSHSHAS FYSFGHSSVD HVVSSLLHNQ HPSLPTNQDN RSGLGFWWED
101: QAFDRLENVD ELKEAVDAVS RMLNNVRLRL DDAVKSNQRD GSLVIHQEDE EVLQLGYKDT NQITKLEGET SASASLLKNV VDNLHIDDRY Y
101: QAFDRLENVD ELKEAVDAVS RMLNNVRLRL DDAVKSNQRD GSLVIHQEDE EVLQLGYKDT NQITKLEGET SASASLLKNV VDNLHIDDRY Y
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.