Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT1G50780.1 | Thale cress | extracellular, vacuole | 67.18 | 67.18 |
| AT5G27130.1 | Thale cress | nucleus | 42.41 | 44.77 |
| Bra020600.1-P | Field mustard | nucleus | 33.13 | 40.68 |
| CDY25046 | Canola | nucleus | 33.13 | 40.68 |
| CDY50584 | Canola | nucleus | 32.51 | 39.92 |
| AT1G60920.1 | Thale cress | nucleus | 11.46 | 19.37 |
| AT1G60880.1 | Thale cress | nucleus | 10.84 | 17.41 |
| AT1G46408.1 | Thale cress | nucleus | 13.0 | 15.79 |
| AT5G04640.1 | Thale cress | nucleus | 15.17 | 15.22 |
| AT5G49420.1 | Thale cress | nucleus | 13.31 | 12.87 |
| AT5G38620.1 | Thale cress | nucleus | 12.69 | 11.75 |
| AT5G49490.1 | Thale cress | nucleus | 9.6 | 10.88 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | EntrezGene:841234 | UniProt:A0A178W5Y4 | ProteinID:AAF79538.1 | ProteinID:AEE32256.1 |
| ArrayExpress:AT1G48150 | EnsemblPlantsGene:AT1G48150 | RefSeq:AT1G48150 | TAIR:AT1G48150 | RefSeq:AT1G48150-TAIR-G | EnsemblPlants:AT1G48150.1 |
| TAIR:AT1G48150.1 | Unigene:At.52071 | GO:GO:0000982 | GO:GO:0000987 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0045944 | GO:GO:0046983 | InterPro:IPR002100 |
| InterPro:IPR036879 | InterPro:MADS_SRF-like | RefSeq:NP_175249.1 | ProteinID:OAP13708.1 | PFAM:PF00319 | PFscan:PS50066 |
| PANTHER:PTHR11945 | PANTHER:PTHR11945:SF277 | UniProt:Q9LNG8 | SMART:SM00432 | SUPFAM:SSF55455 | InterPro:TF_MADSbox |
| InterPro:TF_MADSbox_sf | UniParc:UPI000009D6E4 | SEG:seg | : | : | : |
Description
F21D18.12 [Source:UniProtKB/TrEMBL;Acc:Q9LNG8]
Coordinates
chr1:+:17785397..17786368
Molecular Weight (calculated)
36478.8 Da
IEP (calculated)
4.191
GRAVY (calculated)
-0.766
Length
323 amino acids
Sequence
(BLAST)
(BLAST)
001: MQSSNVTDCT MRKRGTKRKI EIEKRMTKQQ RSVACSKRRP TLFSKAADLC LLSGANIAVF VTSPDENSDV VYSFSGYSHA SEIVDCYLNN KSPPKTTINP
101: ESAKFWWEEP DLYRDCDDLS ELRIIEDRLM RTKKHLMDYL EKKEKSHSVS KSDQNPNNDS GSSSSSSQIA SDFGQNPSTL SPSSLKIVSF DQNSYSSLEP
201: SSQVTTCFDQ NPVFSVGSES SSDQSRYLVN EDSGFVDGLL CETEEENNGM RLPQETQTQP MFTEEDQSFW ENLDVDDVFG LFKDDNNLEV PLQDHSSTNE
301: DDELLIDISE YLSEEAMECP CFS
101: ESAKFWWEEP DLYRDCDDLS ELRIIEDRLM RTKKHLMDYL EKKEKSHSVS KSDQNPNNDS GSSSSSSQIA SDFGQNPSTL SPSSLKIVSF DQNSYSSLEP
201: SSQVTTCFDQ NPVFSVGSES SSDQSRYLVN EDSGFVDGLL CETEEENNGM RLPQETQTQP MFTEEDQSFW ENLDVDDVFG LFKDDNNLEV PLQDHSSTNE
301: DDELLIDISE YLSEEAMECP CFS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.