Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra020600.1-P | Field mustard | nucleus | 98.48 | 98.48 |
| CDY50584 | Canola | nucleus | 88.97 | 88.97 |
| AT5G27130.1 | Thale cress | nucleus | 38.78 | 33.33 |
| AT1G48150.1 | Thale cress | nucleus | 40.68 | 33.13 |
| AT1G50780.1 | Thale cress | extracellular, vacuole | 30.04 | 24.46 |
| CDY28103 | Canola | plastid | 20.15 | 21.46 |
| CDY50510 | Canola | nucleus | 18.25 | 20.96 |
| CDY54756 | Canola | nucleus | 15.59 | 20.71 |
| CDX70208 | Canola | nucleus | 15.59 | 20.4 |
| CDY44873 | Canola | nucleus | 15.59 | 20.4 |
| CDX93668 | Canola | nucleus | 17.87 | 19.5 |
| CDY49671 | Canola | mitochondrion, nucleus | 17.11 | 18.99 |
| CDY12757 | Canola | nucleus | 11.41 | 18.75 |
| CDX85418 | Canola | nucleus | 17.49 | 17.56 |
| CDY32839 | Canola | nucleus | 17.11 | 16.92 |
| CDX77232 | Canola | nucleus | 17.11 | 16.92 |
| CDY16511 | Canola | nucleus | 17.11 | 16.73 |
| CDX86226 | Canola | nucleus | 18.63 | 16.55 |
| CDY16529 | Canola | nucleus | 17.11 | 16.3 |
| CDY67845 | Canola | nucleus | 16.35 | 16.17 |
| CDX85396 | Canola | nucleus | 17.11 | 15.79 |
| CDX86252 | Canola | nucleus | 17.87 | 15.46 |
| CDY40477 | Canola | nucleus | 13.69 | 14.57 |
| CDY12872 | Canola | nucleus | 14.07 | 14.34 |
| CDY12741 | Canola | nucleus | 14.45 | 13.82 |
| CDY46277 | Canola | nucleus | 9.13 | 10.81 |
| CDY01199 | Canola | nucleus | 11.41 | 10.2 |
| CDY12742 | Canola | cytosol, mitochondrion, nucleus | 1.52 | 7.41 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | GO:A0A078GI72 | UniProt:A0A078GI72 | EnsemblPlants:CDY25046 | ProteinID:CDY25046 |
| ProteinID:CDY25046.1 | GO:GO:0000982 | GO:GO:0000987 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0045944 | GO:GO:0046983 | EnsemblPlantsGene:GSBRNA2T00028881001 | InterPro:IPR002100 |
| InterPro:IPR036879 | InterPro:MADS_SRF-like | PFAM:PF00319 | PRINTS:PR00404 | PFscan:PS50066 | PANTHER:PTHR11945 |
| PANTHER:PTHR11945:SF164 | SMART:SM00432 | SUPFAM:SSF55455 | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | UniParc:UPI0004EE7F7E |
| SEG:seg | : | : | : | : | : |
Description
BnaC02g39620DBnaC02g39620D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GI72]
Coordinates
chrLK032167:-:603443..604234
Molecular Weight (calculated)
29284.0 Da
IEP (calculated)
4.521
GRAVY (calculated)
-0.663
Length
263 amino acids
Sequence
(BLAST)
(BLAST)
001: MARGGTKRKI EIKKRETKEQ RAVAYSKRRK TLFSKSAELC CLSGANIAVF VTSPGDKPNV ASSFSGHASA SEIVDCYFNG TLPPKISVPE SKSGFWWTDP
101: DLYSSCDDLS QLDVIEDLIK RTKKDLMDCL EKQEKSRVCC FDSHQNPNSS SQAVTMYQNT SKPLDGSSQV IYGGESSSGQ SRYLVNKDVG NCLWETKKEN
201: NLIMSVPQER EQTQSIINVD GGDEGQSFWD ELYNEDMFGL NNGEDDVMID IGEFLNEIES GES
101: DLYSSCDDLS QLDVIEDLIK RTKKDLMDCL EKQEKSRVCC FDSHQNPNSS SQAVTMYQNT SKPLDGSSQV IYGGESSSGQ SRYLVNKDVG NCLWETKKEN
201: NLIMSVPQER EQTQSIINVD GGDEGQSFWD ELYNEDMFGL NNGEDDVMID IGEFLNEIES GES
001: MQSSNVTDCT MRKRGTKRKI EIEKRMTKQQ RSVACSKRRP TLFSKAADLC LLSGANIAVF VTSPDENSDV VYSFSGYSHA SEIVDCYLNN KSPPKTTINP
101: ESAKFWWEEP DLYRDCDDLS ELRIIEDRLM RTKKHLMDYL EKKEKSHSVS KSDQNPNNDS GSSSSSSQIA SDFGQNPSTL SPSSLKIVSF DQNSYSSLEP
201: SSQVTTCFDQ NPVFSVGSES SSDQSRYLVN EDSGFVDGLL CETEEENNGM RLPQETQTQP MFTEEDQSFW ENLDVDDVFG LFKDDNNLEV PLQDHSSTNE
301: DDELLIDISE YLSEEAMECP CFS
101: ESAKFWWEEP DLYRDCDDLS ELRIIEDRLM RTKKHLMDYL EKKEKSHSVS KSDQNPNNDS GSSSSSSQIA SDFGQNPSTL SPSSLKIVSF DQNSYSSLEP
201: SSQVTTCFDQ NPVFSVGSES SSDQSRYLVN EDSGFVDGLL CETEEENNGM RLPQETQTQP MFTEEDQSFW ENLDVDDVFG LFKDDNNLEV PLQDHSSTNE
301: DDELLIDISE YLSEEAMECP CFS
Arabidopsis Description
F21D18.12 [Source:UniProtKB/TrEMBL;Acc:Q9LNG8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.