Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G06500.1 | CDY25046 | AT1G48150.1 | 15805477 |
| AT5G06500.1 | CDY50584 | AT1G48150.1 | 15805477 |
| AT5G06500.1 | CDX87489 | AT1G77980.1 | 15805477 |
| AT5G06500.1 | CDX88402 | AT1G77980.1 | 15805477 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX70099 | Canola | nucleus | 64.06 | 40.59 |
| CDY64730 | Canola | mitochondrion | 50.78 | 33.85 |
| CDY64727 | Canola | mitochondrion, nucleus | 45.31 | 30.37 |
| CDY67123 | Canola | nucleus | 42.97 | 28.8 |
| CDY04990 | Canola | nucleus | 41.41 | 21.03 |
| CDY65795 | Canola | cytosol | 24.22 | 20.53 |
| CDY14080 | Canola | nucleus | 39.84 | 20.24 |
| AT5G06500.1 | Thale cress | nucleus | 32.03 | 16.94 |
| CDY01060 | Canola | nucleus | 24.22 | 8.99 |
| CDY08493 | Canola | nucleus | 23.44 | 8.55 |
| KRH68023 | Soybean | nucleus | 21.88 | 6.97 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | GO:A0A078EDP2 | EnsemblPlants:CDX98929 | ProteinID:CDX98929 | ProteinID:CDX98929.1 |
| GO:GO:0000982 | GO:GO:0000987 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0045944 | GO:GO:0046983 | EnsemblPlantsGene:GSBRNA2T00107040001 | InterPro:IPR002100 | InterPro:IPR036879 |
| InterPro:MADS_SRF-like | PFAM:PF00319 | PRINTS:PR00404 | PFscan:PS50066 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF153 |
| SMART:SM00432 | SUPFAM:SSF55455 | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | UniParc:UPI0004EE4608 | : |
Description
BnaC09g49060D
Coordinates
chrLK031907:+:661819..662583
Molecular Weight (calculated)
14594.6 Da
IEP (calculated)
8.055
GRAVY (calculated)
-0.876
Length
128 amino acids
Sequence
(BLAST)
(BLAST)
001: MARPKLKLAW IEDRKKRNIA CQKRMKGLMK MAEELTILSD TKACLTFFNR DDGKLVAGPG PCFRPMRRGG VYLMDKWFVD NPEVQKHGDG MTHMGSRFNL
101: NMEPSNEDEE YMKTNEGESS KSGGEDDA
101: NMEPSNEDEE YMKTNEGESS KSGGEDDA
001: MARKKVRAAW IRDDRMRRAS LKRRLTGLIK KVNELSILCD MRASVVVFNR EEEQLTAWPS PEAANSLIDN FYSLTDHERT MKAVDPESYV QTVIEKIEKK
101: RADTRKVITE FEMDELMFQV QNGRELADLS PTEADKLIPY ADKKLMWLSK RMGSTGVDAL RASNVASGSG GNGLNMMETG RSFYYVDKWV FVDPQVQNPC
201: DVETHLPTMV SGLDLNMEPS DEDLGTYKGE SSMAGGAEDD AE
101: RADTRKVITE FEMDELMFQV QNGRELADLS PTEADKLIPY ADKKLMWLSK RMGSTGVDAL RASNVASGSG GNGLNMMETG RSFYYVDKWV FVDPQVQNPC
201: DVETHLPTMV SGLDLNMEPS DEDLGTYKGE SSMAGGAEDD AE
Arabidopsis Description
AGL96AGAMOUS-like 96 [Source:UniProtKB/TrEMBL;Acc:Q9FG20]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.