Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX87489 | Canola | nucleus | 97.87 | 97.87 |
| AT1G77980.1 | Thale cress | nucleus | 85.41 | 84.64 |
| CDY41491 | Canola | nucleus | 75.99 | 73.96 |
| CDX91664 | Canola | nucleus | 75.68 | 73.67 |
| CDY00423 | Canola | nucleus | 74.16 | 72.84 |
| CDY01295 | Canola | nucleus | 68.69 | 72.67 |
| TraesCS4A01G290700.1 | Wheat | nucleus | 29.48 | 62.99 |
| CDX87492 | Canola | nucleus | 41.64 | 59.83 |
| CDX88401 | Canola | nucleus | 42.86 | 57.79 |
| VIT_19s0014g00310.t01 | Wine grape | nucleus | 13.37 | 56.41 |
| KRH18859 | Soybean | nucleus | 52.58 | 51.8 |
| KRH16660 | Soybean | nucleus | 51.67 | 48.99 |
| CDY24740 | Canola | nucleus | 9.42 | 48.44 |
| CDX76715 | Canola | nucleus | 9.12 | 46.88 |
| CDY11489 | Canola | nucleus | 10.94 | 40.45 |
| Os08t0494100-02 | Rice | nucleus | 40.12 | 39.17 |
| CDX76718 | Canola | nucleus | 10.94 | 39.13 |
| GSMUA_Achr3P04450_001 | Banana | nucleus | 41.03 | 39.13 |
| Zm00001d044850_P001 | Maize | nucleus | 32.83 | 38.85 |
| Os06t0223300-01 | Rice | nucleus | 41.64 | 38.06 |
| HORVU4Hr1G003610.5 | Barley | nucleus | 35.26 | 38.03 |
| TraesCS4D01G021100.1 | Wheat | nucleus | 40.73 | 37.96 |
| TraesCS4B01G023300.1 | Wheat | nucleus | 34.95 | 37.34 |
| KXG19627 | Sorghum | nucleus | 41.03 | 36.19 |
| Zm00001d037212_P001 | Maize | nucleus | 39.51 | 35.33 |
| CDX76713 | Canola | nucleus | 13.07 | 29.25 |
| CDX76717 | Canola | nucleus | 15.2 | 28.25 |
| CDX69305 | Canola | nucleus | 17.02 | 27.59 |
| GSMUA_Achr9P13010_001 | Banana | cytosol, nucleus, plasma membrane | 43.16 | 22.33 |
| Solyc05g051830.2.1 | Tomato | nucleus | 26.14 | 22.11 |
| CDY58993 | Canola | nucleus | 24.92 | 21.64 |
| CDY26732 | Canola | nucleus | 23.71 | 20.74 |
| CDX95922 | Canola | mitochondrion | 21.28 | 19.18 |
| CDY45183 | Canola | nucleus | 21.88 | 19.1 |
| CDY03021 | Canola | nucleus | 22.19 | 18.62 |
| CDX96703 | Canola | nucleus | 24.62 | 18.58 |
| CDY40939 | Canola | golgi, mitochondrion, plasma membrane, plastid | 21.28 | 16.79 |
| CDY60833 | Canola | nucleus | 20.97 | 16.27 |
| CDX83816 | Canola | nucleus | 24.01 | 15.25 |
| CDY17422 | Canola | nucleus | 20.67 | 13.85 |
| CDY26727 | Canola | extracellular | 8.21 | 12.92 |
| CDY64870 | Canola | nucleus | 5.78 | 7.98 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | GO:A0A078DHF5 | EnsemblPlants:CDX88402 | ProteinID:CDX88402 | ProteinID:CDX88402.1 |
| ncoils:Coil | GO:GO:0000977 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0045944 | GO:GO:0046983 | EnsemblPlantsGene:GSBRNA2T00147935001 | InterPro:IPR002100 | InterPro:IPR036879 | InterPro:MADS_MEF2-like |
| PFAM:PF00319 | PRINTS:PR00404 | ScanProsite:PS00350 | PFscan:PS50066 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF154 |
| SMART:SM00432 | SUPFAM:SSF55455 | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | UniParc:UPI0004EDDEA3 | SEG:seg |
Description
BnaC06g38460D
Coordinates
chrLK031855:-:794262..797997
Molecular Weight (calculated)
37655.0 Da
IEP (calculated)
4.666
GRAVY (calculated)
-0.696
Length
329 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRVKLEIKR IENNTNRQVT FSKRRNGLIK KAYELSILCD IDIALLMFSP SDRLSLFSGK TRVEDVFTRF INLPDQEREN ALTFTDQSRR PDFQSKEYLL
101: RTLQQLKTEN DIALQLTNPS AINSDVQELE QEVYRLQQQL HMAEEELRKY EPDPSRFTTM EEYEACEKKL IETLTHVTQR REHILSDQLS SYETSAMQHQ
201: NMGGPFVNDV AGGWLAENGP IQTQLFDASA NSAIYETLLQ GSSSSSNQNN NMSECNVTNH NGDMFQEWAQ AYTSTTGLNP SALFPPIQHQ HGLVDPNIKE
301: SEIPVITREA QADHEVSDYD IRMPQLSSQ
101: RTLQQLKTEN DIALQLTNPS AINSDVQELE QEVYRLQQQL HMAEEELRKY EPDPSRFTTM EEYEACEKKL IETLTHVTQR REHILSDQLS SYETSAMQHQ
201: NMGGPFVNDV AGGWLAENGP IQTQLFDASA NSAIYETLLQ GSSSSSNQNN NMSECNVTNH NGDMFQEWAQ AYTSTTGLNP SALFPPIQHQ HGLVDPNIKE
301: SEIPVITREA QADHEVSDYD IRMPQLSSQ
001: MGRVKLEIKR IENTTNRQVT FSKRRNGLIK KAYELSILCD IDIALLMFSP SDRLSLFSGK TRIEDVFSRY INLSDQEREN ALVFPDQSRR PDFQSKEYLL
101: RTLQQLKAEN DIALQLTNPT AINSDVEELE HEVYKLQQQL LMAEEELRKY EPDPIRFTTM EEYETCEKQL MDTLTRVNQR REHILSQDQL SSYEASALQQ
201: QQSMGGPFGN DVVGGWLTEN GPNEAHLFDA SAHSAMYETL LQGSSSSSNQ NNIMGESNVS NHNGDMFQEW AQAYNSTTAH NPSTLFPPMQ HQHGLVVDPN
301: IEEIEIPVMK KDAQADHEVS DYDIRMPQLS SQ
101: RTLQQLKAEN DIALQLTNPT AINSDVEELE HEVYKLQQQL LMAEEELRKY EPDPIRFTTM EEYETCEKQL MDTLTRVNQR REHILSQDQL SSYEASALQQ
201: QQSMGGPFGN DVVGGWLTEN GPNEAHLFDA SAHSAMYETL LQGSSSSSNQ NNIMGESNVS NHNGDMFQEW AQAYNSTTAH NPSTLFPPMQ HQHGLVVDPN
301: IEEIEIPVMK KDAQADHEVS DYDIRMPQLS SQ
Arabidopsis Description
AGL66Agamous-like MADS-box protein AGL66 [Source:UniProtKB/Swiss-Prot;Acc:Q1PFC2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.