Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra024792.1-P | Field mustard | nucleus | 99.73 | 99.73 |
| CDY03021 | Canola | nucleus | 96.82 | 93.11 |
| AT2G03060.2 | Thale cress | nucleus | 81.43 | 79.53 |
| CDY60833 | Canola | nucleus | 77.98 | 69.34 |
| CDY17422 | Canola | nucleus | 78.25 | 60.08 |
| CDX76715 | Canola | nucleus | 7.96 | 46.88 |
| CDY24740 | Canola | nucleus | 7.43 | 43.75 |
| CDX95922 | Canola | mitochondrion | 40.32 | 41.64 |
| GSMUA_Achr3P24170_001 | Banana | nucleus | 38.46 | 40.62 |
| GSMUA_Achr11P... | Banana | nucleus | 24.14 | 39.91 |
| GSMUA_Achr2P01740_001 | Banana | nucleus | 35.28 | 39.0 |
| CDY11489 | Canola | nucleus | 9.02 | 38.2 |
| KXG29049 | Sorghum | nucleus | 38.2 | 37.99 |
| CDY58993 | Canola | nucleus | 37.67 | 37.47 |
| TraesCS4B01G150200.1 | Wheat | nucleus | 37.67 | 36.5 |
| TraesCS4D01G147000.1 | Wheat | nucleus | 37.4 | 36.25 |
| TraesCS4A01G169000.1 | Wheat | nucleus | 37.14 | 36.18 |
| HORVU4Hr1G032440.7 | Barley | nucleus | 37.14 | 36.18 |
| CDY26732 | Canola | nucleus | 36.07 | 36.17 |
| CDY40939 | Canola | golgi, mitochondrion, plasma membrane, plastid | 39.79 | 35.97 |
| CDX76718 | Canola | nucleus | 8.75 | 35.87 |
| Os11t0658700-01 | Rice | nucleus | 37.14 | 35.71 |
| CDX96703 | Canola | nucleus | 37.14 | 32.11 |
| CDY26727 | Canola | extracellular | 16.18 | 29.19 |
| CDX76713 | Canola | nucleus | 11.14 | 28.57 |
| CDX83816 | Canola | nucleus | 37.4 | 27.22 |
| CDX87492 | Canola | nucleus | 16.45 | 27.07 |
| CDX76717 | Canola | nucleus | 12.47 | 26.55 |
| CDX88401 | Canola | nucleus | 16.45 | 25.41 |
| Zm00001d048697_P003 | Maize | nucleus, plasma membrane, plastid | 32.89 | 25.25 |
| CDX69305 | Canola | nucleus | 13.53 | 25.12 |
| CDY01295 | Canola | nucleus | 20.42 | 24.76 |
| CDY00423 | Canola | nucleus | 20.95 | 23.58 |
| CDY41491 | Canola | nucleus | 20.95 | 23.37 |
| CDX91664 | Canola | nucleus | 20.42 | 22.78 |
| CDX87489 | Canola | nucleus | 19.36 | 22.19 |
| CDX88402 | Canola | nucleus | 19.1 | 21.88 |
| CDY64870 | Canola | nucleus | 10.61 | 16.81 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | GO:A0A078I7S1 | UniProt:A0A078I7S1 | EnsemblPlants:CDY45183 | ProteinID:CDY45183 |
| ProteinID:CDY45183.1 | GO:GO:0000982 | GO:GO:0000987 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0045944 | GO:GO:0046983 | EnsemblPlantsGene:GSBRNA2T00081607001 | InterPro:IPR002100 |
| InterPro:IPR036879 | InterPro:MADS_SRF-like | PFAM:PF00319 | PRINTS:PR00404 | PFscan:PS50066 | PANTHER:PTHR11945 |
| PANTHER:PTHR11945:SF169 | SMART:SM00432 | SUPFAM:SSF55455 | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | UniParc:UPI0004EE4763 |
| SEG:seg | : | : | : | : | : |
Description
BnaA06g33870DBnaA06g33870D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I7S1]
Coordinates
chrLK032617:-:97752..100660
Molecular Weight (calculated)
42679.5 Da
IEP (calculated)
6.794
GRAVY (calculated)
-0.594
Length
377 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRVKLKIKK LENTAGRQAT FAKRKNGILK KASELSVLCD IDLVLLMFSP TGKPSLCCAQ RSSIEEVIAK FSQVTPEERA KRKIEGLETL KKTFQKLDHH
101: VNIRDFISSS NPTTEDLSTR ARILQDRISE IHGRLRYWTE PDKINNVEDL GQLEISIRQS LDQLRAHKEH FGQQQHAMQI ENANFVKDWS TSLLQDGIQI
201: PLEQQLQSMP WILNTNTTNI VTEEHNSIPQ REVECSASSS FGSYPGYFGT GKSPEITISG QETSFLDELT NGHLKPQTIT QQQFTDNSVI PYIPSLQNDL
301: NHHQTLPLPL PHPPPVFNFP MNQREYHMNG FFEAPPPGSS VYNNTANQAR FGSNSSSLPC SISMLDEYLF SQMQQPN
101: VNIRDFISSS NPTTEDLSTR ARILQDRISE IHGRLRYWTE PDKINNVEDL GQLEISIRQS LDQLRAHKEH FGQQQHAMQI ENANFVKDWS TSLLQDGIQI
201: PLEQQLQSMP WILNTNTTNI VTEEHNSIPQ REVECSASSS FGSYPGYFGT GKSPEITISG QETSFLDELT NGHLKPQTIT QQQFTDNSVI PYIPSLQNDL
301: NHHQTLPLPL PHPPPVFNFP MNQREYHMNG FFEAPPPGSS VYNNTANQAR FGSNSSSLPC SISMLDEYLF SQMQQPN
001: MGRVKLKIKK LENTNGRQST FAKRKNGILK KANELSILCD IDIVLLMFSP TGKAAICCGT RSSMEEVIAK FSQVTPQERT KRKFESLENL KKTFQKLDHD
101: VNIREFIASS NSTVEDLSTQ ARILQARISE IHGRLSYWTE PDKINNVEHL GQLEISIRQS LDQLRAHKEH FGQQQQAMQI ENANFVKDWS TCSMQDGIQI
201: PLEQQLQSMS WILNSNTTNI VTEEHNSIPQ REVECSASSS FGSYPGYFGT GKSPEMTIPG QETSFLDELN TGQLKQDTSS QQQFTNNNNI TAYNPNLHND
301: MNHHQTLPPP PLPLTLPHAQ VYIPMNQREY HMNGFFEAPP PDSSAYNDNT NQTRFGSSSS SLPCSISMFD EYLFSQMQQP N
101: VNIREFIASS NSTVEDLSTQ ARILQARISE IHGRLSYWTE PDKINNVEHL GQLEISIRQS LDQLRAHKEH FGQQQQAMQI ENANFVKDWS TCSMQDGIQI
201: PLEQQLQSMS WILNSNTTNI VTEEHNSIPQ REVECSASSS FGSYPGYFGT GKSPEMTIPG QETSFLDELN TGQLKQDTSS QQQFTNNNNI TAYNPNLHND
301: MNHHQTLPPP PLPLTLPHAQ VYIPMNQREY HMNGFFEAPP PDSSAYNDNT NQTRFGSSSS SLPCSISMFD EYLFSQMQQP N
Arabidopsis Description
AGL30Agamous-like MADS-box protein AGL30 [Source:UniProtKB/Swiss-Prot;Acc:Q1PFA4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.