Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 5
- mitochondrion 3
Predictors | GFP | MS/MS | Papers |
---|---|---|---|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
GSMUA_Achr2P01740_001 | Banana | nucleus | 74.12 | 49.56 |
GSMUA_Achr3P24170_001 | Banana | nucleus | 75.44 | 48.18 |
PGSC0003DMT400050265 | Potato | nucleus | 25.44 | 40.85 |
KXG29049 | Sorghum | nucleus | 60.53 | 36.41 |
KRH03491 | Soybean | nucleus | 53.51 | 34.46 |
VIT_17s0000g06340.t01 | Wine grape | nucleus | 55.26 | 33.6 |
TraesCS4B01G150200.1 | Wheat | nucleus | 57.02 | 33.42 |
TraesCS4D01G147000.1 | Wheat | nucleus | 57.02 | 33.42 |
TraesCS4A01G169000.1 | Wheat | nucleus | 56.58 | 33.33 |
HORVU4Hr1G032440.7 | Barley | nucleus | 56.58 | 33.33 |
KRH50568 | Soybean | nucleus | 50.88 | 32.95 |
Os11t0658700-01 | Rice | nucleus | 56.58 | 32.91 |
KRH56901 | Soybean | nucleus | 48.25 | 32.54 |
KRG89584 | Soybean | nucleus | 50.0 | 30.81 |
CDY58993 | Canola | nucleus | 50.44 | 30.34 |
CDY26732 | Canola | nucleus | 49.56 | 30.05 |
Bra031049.1-P | Field mustard | nucleus | 50.0 | 29.84 |
Bra025685.1-P | Field mustard | nucleus | 48.68 | 29.29 |
Bra004393.1-P | Field mustard | nucleus | 44.3 | 28.94 |
CDX95922 | Canola | mitochondrion | 44.74 | 27.95 |
AT1G69540.2 | Thale cress | nucleus | 44.3 | 27.52 |
Bra016544.1-P | Field mustard | nucleus | 36.84 | 27.45 |
AT1G18750.3 | Thale cress | nucleus | 49.12 | 27.12 |
AT2G03060.2 | Thale cress | nucleus | 44.74 | 26.42 |
CDX96703 | Canola | nucleus | 50.0 | 26.15 |
Bra017404.1-P | Field mustard | nucleus | 42.98 | 25.86 |
CDY40939 | Canola | golgi, mitochondrion, plasma membrane, plastid | 44.3 | 24.22 |
Bra024792.1-P | Field mustard | nucleus | 39.91 | 24.14 |
CDY45183 | Canola | nucleus | 39.91 | 24.14 |
CDY26727 | Canola | extracellular | 21.93 | 23.92 |
KRH74891 | Soybean | endoplasmic reticulum, golgi, mitochondrion, vacuole | 39.91 | 23.64 |
CDY03021 | Canola | nucleus | 39.47 | 22.96 |
CDY60833 | Canola | nucleus | 42.54 | 22.88 |
CDX83816 | Canola | nucleus | 50.44 | 22.2 |
KRH70750 | Soybean | nucleus | 21.93 | 22.12 |
Zm00001d048697_P003 | Maize | nucleus, plasma membrane, plastid | 46.93 | 21.79 |
Solyc03g115910.1.1 | Tomato | plastid | 38.16 | 20.86 |
CDY17422 | Canola | nucleus | 43.42 | 20.16 |
GSMUA_Achr3P04450_001 | Banana | nucleus | 29.39 | 19.42 |
GSMUA_Achr9P13010_001 | Banana | cytosol, nucleus, plasma membrane | 29.39 | 10.53 |
CDY64870 | Canola | nucleus | 10.96 | 10.5 |
Protein Annotations
MapMan:15.5.14 | Gene3D:3.40.1810.10 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
GO:GO:0046983 | EnsemblPlantsGene:GSMUA_Achr11G14240_001 | EnsemblPlants:GSMUA_Achr11P14240_001 | EnsemblPlants:GSMUA_Achr11T14240_001 | InterPro:IPR002100 | InterPro:IPR036879 |
UniProt:M0RS54 | PFAM:PF00319 | PRINTS:PR00404 | PFscan:PS50066 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF169 |
SMART:SM00432 | SUPFAM:SSF55455 | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | UniParc:UPI00029680D2 | : |
Description
OsMADS68 - MADS-box family gene with MIKC* type-box, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr11G14240_001]
Coordinates
chr11:-:15301332..15305807
Molecular Weight (calculated)
25973.2 Da
IEP (calculated)
8.604
GRAVY (calculated)
-0.496
Length
228 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRVKLKIKR LENSNSRQVT YSKRKIGLTN KAKELSILCD IDLVLLMFAP NGKPTICVGD RSNTEEVVAR FAQVSQQEKG KKACSNSHWL LNKTFKKLDH
101: DVDIQEFLGS STQTVEEITN HWSSLHGQLL DVQKRLSNWA DPDKIDNINH ITTMEQSLKE SLGQIQVHKE NFGKQLISVD YSGQVKCLFS RVLPFKCCEQ
201: GASPVSWLHI NDDQQLMLPQ DANLLPWR
101: DVDIQEFLGS STQTVEEITN HWSSLHGQLL DVQKRLSNWA DPDKIDNINH ITTMEQSLKE SLGQIQVHKE NFGKQLISVD YSGQVKCLFS RVLPFKCCEQ
201: GASPVSWLHI NDDQQLMLPQ DANLLPWR
001: MGRVKLKIKR LESTSNRQVT YTKRKNGILK KAKELSILCD IDIVLLMFSP TGRATAFHGE HSCIEEVISK FAQLTPQERT KRKLESLEAL KKTFKKLDHD
101: VNIHDFLGAR NQTIEGLSNQ VAIYQAQLME CHRRLSCWTN IDRIENTEHL DLLEESLRKS IERIQIHKEH YRKNQLLPIE CATTQFHSGI QLPMAMGGNS
201: SMQEAHSMSW LPDNDHQQTI LPGDSSFLPH REMDGSIPVY SSCFFESTKP EDQICSNPGQ QFEQLEQQGN GCLGLQQLGE EYSYPTPFGT TLGMEEDQEK
301: KIKSEMELNN LQQQQQQQQQ QQQQDPSMYD PMANNNGGCF QIPHDQSMFV NDHHHHHHHH HQNWVPDSMF GQTSYNQVCV FTPPLELSR
101: VNIHDFLGAR NQTIEGLSNQ VAIYQAQLME CHRRLSCWTN IDRIENTEHL DLLEESLRKS IERIQIHKEH YRKNQLLPIE CATTQFHSGI QLPMAMGGNS
201: SMQEAHSMSW LPDNDHQQTI LPGDSSFLPH REMDGSIPVY SSCFFESTKP EDQICSNPGQ QFEQLEQQGN GCLGLQQLGE EYSYPTPFGT TLGMEEDQEK
301: KIKSEMELNN LQQQQQQQQQ QQQQDPSMYD PMANNNGGCF QIPHDQSMFV NDHHHHHHHH HQNWVPDSMF GQTSYNQVCV FTPPLELSR
Arabidopsis Description
AGL65AGAMOUS-like 65 [Source:TAIR;Acc:AT1G18750]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.