CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Predotar:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH50568	Soybean	nucleus	82.16	86.36
KRH74891	Soybean	endoplasmic reticulum, golgi, mitochondrion, vacuole	54.32	52.21
GSMUA_Achr11P...	Banana	nucleus	30.81	50.0
GSMUA_Achr3P24170_001	Banana	nucleus	47.84	49.58
KRH70750	Soybean	nucleus	29.73	48.67
GSMUA_Achr2P01740_001	Banana	nucleus	44.05	47.8
KRH03491	Soybean	nucleus	45.41	47.46
KRH56901	Soybean	nucleus	41.89	45.86
Bra004393.1-P	Field mustard	nucleus	42.16	44.7
CDX95922	Canola	mitochondrion	42.16	42.74
KXG29049	Sorghum	nucleus	43.24	42.22
AT1G69540.2	Thale cress	nucleus	41.62	41.96
TraesCS4B01G150200.1	Wheat	nucleus	43.51	41.39
Os11t0658700-01	Rice	nucleus	43.78	41.33
TraesCS4D01G147000.1	Wheat	nucleus	43.24	41.13
HORVU4Hr1G032440.7	Barley	nucleus	42.97	41.09
TraesCS4A01G169000.1	Wheat	nucleus	42.7	40.83
CDY40939	Canola	golgi, mitochondrion, plasma membrane, plastid	42.97	38.13
Zm00001d048697_P003	Maize	nucleus, plasma membrane, plastid	33.78	25.46
KRH18859	Soybean	nucleus	21.89	24.25
KRH16660	Soybean	nucleus	22.43	23.92
KRH61376	Soybean	nucleus	18.11	20.62

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	UniProt:A0A0R0E723	EMBL:ACUP02012226	ncoils:Coil	EnsemblPlantsGene:GLYMA_20G034000
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0046983	InterPro:IPR002100
InterPro:IPR036879	EnsemblPlants:KRG89584	ProteinID:KRG89584	ProteinID:KRG89584.1	PFAM:PF00319	PRINTS:PR00404
PFscan:PS50066	PANTHER:PTHR11945	PANTHER:PTHR11945:SF169	SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_MADSbox
InterPro:TF_MADSbox_sf	UniParc:UPI0006EDB14B	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr20:-:4655338..4663864

Molecular Weight (calculated)

42214.1 Da

IEP (calculated)

7.296

GRAVY (calculated)

-0.610

Length

370 amino acids

Sequence
(BLAST)

001: MVHVSCMMGR VKLKIKRLEN TNGRPATYAK RRNGIMKKAA ELSILCDIDI ILLMFAPNGK PSLCRGRCSN FEEVITKFGQ LTPQERTKRK LETLEALKKT
101: FKKLDHDVNV QEFFGTSSQT IEGRCYVSLT DIGQDLSNQA KLLQTQIFGT HKRLSHWTEF DKINSVDQLG RMENSLRESL DQIRTHKENV KKQQQLVSLQ
201: CNNQLNEMNI PFRMTAQQLQ PLSWIVNDND QNIVLPEDSN MFLHKDVEGS VSSSFGSYDN YFGSSIKTDM SSSTQENGVL SDMSNIAPMR LQLNGQFPCL
301: QYNFNLLNNL KFQPSVEINP HENHVDYHVN EGFEAPRSSY DSNNHHGWAS TSGSCGITMF EEQLYAQQPN

Best Arabidopsis Sequence Match ( AT2G03060.3 )
(BLAST)

001: MGRVKLKIKK LENTNGRQST FAKRKNGILK KANELSILCD IDIVLLMFSP TGKAAICCGT RSSMEEVIAK FSQVTPQERT KRKFESLENL KKTFQKLDHD
101: VNIREFIASS NSTVEDLSTQ ARILQARISE IHGRLSYWTE PDKINNVEHL GQLEISIRQS LDQLRAHKEH FGQQQQAMQI ENANFVKDWS TCSMQDGIQI
201: PLEQQLQSMS WILNSNTTNI VTEEHNSIPQ REVECSASSS FGSYPGYFGT GKSPEMTIPG QETSFLDELN TGQLKQDTSS QQQFTNNNNI TAYNPNLHND
301: MNHHQTLPPP PLPLTLPHAQ VYIPMNQREY HMNGFFEAPP PDSSAYNDNT NQTRFGSSSS SLPCSISMFD EYLFSQMQQP N

Arabidopsis Description

AGL30Agamous-like MADS-box protein AGL30 [Source:UniProtKB/Swiss-Prot;Acc:Q1PFA4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.