Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr2P01740_001 | Banana | nucleus | 82.35 | 86.22 |
| GSMUA_Achr11P... | Banana | nucleus | 48.18 | 75.44 |
| KXG29049 | Sorghum | nucleus | 61.62 | 58.05 |
| HORVU4Hr1G032440.7 | Barley | nucleus | 61.9 | 57.11 |
| TraesCS4B01G150200.1 | Wheat | nucleus | 61.9 | 56.81 |
| TraesCS4A01G169000.1 | Wheat | nucleus | 61.34 | 56.59 |
| TraesCS4D01G147000.1 | Wheat | nucleus | 61.62 | 56.56 |
| Os11t0658700-01 | Rice | nucleus | 60.78 | 55.36 |
| VIT_17s0000g06340.t01 | Wine grape | nucleus | 56.58 | 53.87 |
| KRH50568 | Soybean | nucleus | 51.54 | 52.27 |
| KRH03491 | Soybean | nucleus | 50.14 | 50.56 |
| KRH56901 | Soybean | nucleus | 47.34 | 50.0 |
| KRG89584 | Soybean | nucleus | 49.58 | 47.84 |
| PGSC0003DMT400050265 | Potato | nucleus | 18.21 | 45.77 |
| CDY58993 | Canola | nucleus | 44.82 | 42.22 |
| Bra031049.1-P | Field mustard | nucleus | 44.82 | 41.88 |
| CDY26732 | Canola | nucleus | 43.7 | 41.49 |
| Bra025685.1-P | Field mustard | nucleus | 42.02 | 39.58 |
| AT1G69540.2 | Thale cress | nucleus | 40.62 | 39.51 |
| Bra004393.1-P | Field mustard | nucleus | 38.38 | 39.26 |
| Bra017404.1-P | Field mustard | nucleus | 41.46 | 39.05 |
| Bra024792.1-P | Field mustard | nucleus | 40.9 | 38.73 |
| CDY45183 | Canola | nucleus | 40.62 | 38.46 |
| AT2G03060.2 | Thale cress | nucleus | 41.46 | 38.34 |
| AT1G18750.3 | Thale cress | nucleus | 44.26 | 38.26 |
| Bra016544.1-P | Field mustard | nucleus | 32.49 | 37.91 |
| CDX95922 | Canola | mitochondrion | 38.66 | 37.81 |
| KRH70750 | Soybean | nucleus | 23.81 | 37.61 |
| CDY03021 | Canola | nucleus | 40.62 | 36.99 |
| CDX96703 | Canola | nucleus | 43.98 | 36.01 |
| Zm00001d048697_P003 | Maize | nucleus, plasma membrane, plastid | 49.3 | 35.85 |
| CDY60833 | Canola | nucleus | 41.18 | 34.67 |
| KRH74891 | Soybean | endoplasmic reticulum, golgi, mitochondrion, vacuole | 37.25 | 34.55 |
| CDY26727 | Canola | extracellular | 19.33 | 33.01 |
| CDY40939 | Canola | golgi, mitochondrion, plasma membrane, plastid | 38.1 | 32.61 |
| Solyc03g115910.1.1 | Tomato | plastid | 36.97 | 31.65 |
| CDY17422 | Canola | nucleus | 42.02 | 30.55 |
| CDX83816 | Canola | nucleus | 44.26 | 30.5 |
| GSMUA_Achr3P04450_001 | Banana | nucleus | 22.97 | 23.77 |
| CDY64870 | Canola | nucleus | 14.85 | 22.27 |
| GSMUA_Achr9P13010_001 | Banana | cytosol, nucleus, plasma membrane | 23.53 | 13.21 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | ncoils:Coil | GO:GO:0000982 | GO:GO:0000987 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0045944 | GO:GO:0046983 |
| EnsemblPlantsGene:GSMUA_Achr3G24170_001 | EnsemblPlants:GSMUA_Achr3P24170_001 | EnsemblPlants:GSMUA_Achr3T24170_001 | InterPro:IPR002100 | InterPro:IPR036879 | UniProt:M0SHD3 |
| InterPro:MADS_SRF-like | PFAM:PF00319 | PRINTS:PR00404 | PFscan:PS50066 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF156 |
| SMART:SM00432 | SUPFAM:SSF55455 | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | UniParc:UPI000295E569 | : |
Description
OsMADS68 - MADS-box family gene with MIKC* type-box, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr3G24170_001]
Coordinates
chr3:-:24792376..24799606
Molecular Weight (calculated)
40360.5 Da
IEP (calculated)
6.931
GRAVY (calculated)
-0.614
Length
357 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRVKLKIKR LENSSSRQVT YSKRKAGILK KAKELSILCD IDLVLLMFAP NGKPTICVGD RSNIEEVVAR FAQVSPQERA KRKLESLEAL RKTFKKLDHD
101: VNIQEFLGSS TQTVEELTNH LRSLHGQILD VQKRLSYWTD PDKISNIDHI RAMEQSLKES LSRIQAHKEN YGKQLISLEC SGQFQNDMHL SSGLGCAQGA
201: SPLQWLHNND GQQLMLPQDA NLIPQRDVGC STDTSLQNYP AYFSTGKQTD ANEPVQEDSL HEFSPNACLR LQLGGQYPYQ SYGQNLLSDR TFKPDAENSL
301: QESTIDYQVN QFETPRSGYD ASFQNWASTS GTCGVAIYDE QSYTQVSFRR IFTFTIT
101: VNIQEFLGSS TQTVEELTNH LRSLHGQILD VQKRLSYWTD PDKISNIDHI RAMEQSLKES LSRIQAHKEN YGKQLISLEC SGQFQNDMHL SSGLGCAQGA
201: SPLQWLHNND GQQLMLPQDA NLIPQRDVGC STDTSLQNYP AYFSTGKQTD ANEPVQEDSL HEFSPNACLR LQLGGQYPYQ SYGQNLLSDR TFKPDAENSL
301: QESTIDYQVN QFETPRSGYD ASFQNWASTS GTCGVAIYDE QSYTQVSFRR IFTFTIT
001: MGRVKLKIKR LESTSNRQVT YTKRKNGILK KAKELSILCD IDIVLLMFSP TGRATAFHGE HSCIEEVISK FAQLTPQERT KRKLESLEAL KKTFKKLDHD
101: VNIHDFLGAR NQTIEGLSNQ VAIYQAQLME CHRRLSCWTN IDRIENTEHL DLLEESLRKS IERIQIHKEH YRKNQLLPIE CATTQFHSGI QLPMAMGGNS
201: SMQEAHSMSW LPDNDHQQTI LPGDSSFLPH REMDGSIPVY SSCFFESTKP EDQICSNPGQ QFEQLEQQGN GCLGLQQLGE EYSYPTPFGT TLGMEEDQEK
301: KIKSEMELNN LQQQQQQQQQ QQQQDPSMYD PMANNNGGCF QIPHDQSMFV NDHHHHHHHH HQNWVPDSMF GQTSYNQVCV FTPPLELSR
101: VNIHDFLGAR NQTIEGLSNQ VAIYQAQLME CHRRLSCWTN IDRIENTEHL DLLEESLRKS IERIQIHKEH YRKNQLLPIE CATTQFHSGI QLPMAMGGNS
201: SMQEAHSMSW LPDNDHQQTI LPGDSSFLPH REMDGSIPVY SSCFFESTKP EDQICSNPGQ QFEQLEQQGN GCLGLQQLGE EYSYPTPFGT TLGMEEDQEK
301: KIKSEMELNN LQQQQQQQQQ QQQQDPSMYD PMANNNGGCF QIPHDQSMFV NDHHHHHHHH HQNWVPDSMF GQTSYNQVCV FTPPLELSR
Arabidopsis Description
AGL65AGAMOUS-like 65 [Source:TAIR;Acc:AT1G18750]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.