Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
Bra017404.1-P | Field mustard | nucleus | 73.12 | 94.72 |
CDY60833 | Canola | nucleus | 74.95 | 86.79 |
CDY45183 | Canola | nucleus | 60.08 | 78.25 |
AT2G03060.2 | Thale cress | nucleus | 61.3 | 77.98 |
CDY03021 | Canola | nucleus | 59.67 | 74.74 |
CDY24740 | Canola | nucleus | 5.91 | 45.31 |
CDX76715 | Canola | nucleus | 5.91 | 45.31 |
CDX95922 | Canola | mitochondrion | 32.38 | 43.56 |
GSMUA_Achr11P... | Banana | nucleus | 20.16 | 43.42 |
GSMUA_Achr3P24170_001 | Banana | nucleus | 30.55 | 42.02 |
GSMUA_Achr2P01740_001 | Banana | nucleus | 28.11 | 40.47 |
CDY40939 | Canola | golgi, mitochondrion, plasma membrane, plastid | 32.99 | 38.85 |
CDY58993 | Canola | nucleus | 29.53 | 38.26 |
CDY26732 | Canola | nucleus | 29.12 | 38.03 |
CDX76718 | Canola | nucleus | 6.92 | 36.96 |
TraesCS4B01G150200.1 | Wheat | nucleus | 29.12 | 36.76 |
TraesCS4D01G147000.1 | Wheat | nucleus | 28.92 | 36.5 |
HORVU4Hr1G032440.7 | Barley | nucleus | 28.72 | 36.43 |
TraesCS4A01G169000.1 | Wheat | nucleus | 28.51 | 36.18 |
KXG29049 | Sorghum | nucleus | 27.9 | 36.15 |
CDY11489 | Canola | nucleus | 6.52 | 35.96 |
Os11t0658700-01 | Rice | nucleus | 28.11 | 35.2 |
CDX96703 | Canola | nucleus | 29.33 | 33.03 |
CDX83816 | Canola | nucleus | 29.74 | 28.19 |
CDY26727 | Canola | extracellular | 11.41 | 26.79 |
CDX76713 | Canola | nucleus | 7.94 | 26.53 |
CDX69305 | Canola | nucleus | 10.39 | 25.12 |
CDX76717 | Canola | nucleus | 8.76 | 24.29 |
Zm00001d048697_P003 | Maize | nucleus, plasma membrane, plastid | 24.03 | 24.03 |
CDX87492 | Canola | nucleus | 11.2 | 24.02 |
CDX88401 | Canola | nucleus | 11.61 | 23.36 |
CDY01295 | Canola | nucleus | 14.26 | 22.51 |
CDY00423 | Canola | nucleus | 14.26 | 20.9 |
CDY41491 | Canola | nucleus | 14.26 | 20.71 |
CDX88402 | Canola | nucleus | 13.85 | 20.67 |
CDX87489 | Canola | nucleus | 13.85 | 20.67 |
CDX91664 | Canola | nucleus | 14.05 | 20.41 |
CDY64870 | Canola | nucleus | 8.76 | 18.07 |
Protein Annotations
MapMan:15.5.14 | Gene3D:3.40.1810.10 | GO:A0A078FXE9 | UniProt:A0A078FXE9 | EnsemblPlants:CDY17422 | ProteinID:CDY17422 |
ProteinID:CDY17422.1 | ncoils:Coil | GO:GO:0000982 | GO:GO:0000987 | GO:GO:0003674 | GO:GO:0003676 |
GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 |
GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0045944 | GO:GO:0046983 | EnsemblPlantsGene:GSBRNA2T00095550001 |
InterPro:IPR002100 | InterPro:IPR036879 | InterPro:MADS_SRF-like | PFAM:PF00319 | PRINTS:PR00404 | PFscan:PS50066 |
PANTHER:PTHR11945 | PANTHER:PTHR11945:SF169 | SMART:SM00432 | SUPFAM:SSF55455 | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf |
UniParc:UPI0004EE36A0 | SEG:seg | : | : | : | : |
Description
BnaC09g21150DBnaC09g21150D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FXE9]
Coordinates
chrLK032073:-:102933..106347
Molecular Weight (calculated)
55666.2 Da
IEP (calculated)
6.701
GRAVY (calculated)
-0.719
Length
491 amino acids
Sequence
(BLAST)
(BLAST)
001: MEIYGGDEKS RARSEEPESL DGGDGSSTER GVYSESFLRV DVEVVEIDKF LTEENSSVGS FSGETFGSHG GEIRFNLFKG KMSCYNRMGR VKLKIKKLEN
101: TNGRQATFAK RKNGILKKAN ELSILCDIDL ILLMFSPGGK PSLCCGRRSS IEEVIAKFSQ VTPEERTKKK VESLETLKKT FLKLDHTVNI RELIASSNST
201: TEDLSTQASI LQARISEIHG RLSYWTELDK INNVDHLGQL EISVRQSLDQ LRAHKEHLGQ QQQQAMQLEN ANFVKDWSTC SLQDGIEIPL EQQLQSMSWI
301: LNSDNTTNII TEEHNPIPKR EVECSASSSF GSYPGYFGTG KSSETSFLDE LNTTNGDIKP QLCTNNNIIP YNSNIMQNDI KHHQTYPPPL PHPPVFNLPS
401: NQREYHMNGF FEAPPQPNGT STYNNNNHNQ ARFGSSSSSL PCSISMLDEY LFSQVKKTRK RHSFFSQRSN TFLFPYFNRC SNRTERERFD E
101: TNGRQATFAK RKNGILKKAN ELSILCDIDL ILLMFSPGGK PSLCCGRRSS IEEVIAKFSQ VTPEERTKKK VESLETLKKT FLKLDHTVNI RELIASSNST
201: TEDLSTQASI LQARISEIHG RLSYWTELDK INNVDHLGQL EISVRQSLDQ LRAHKEHLGQ QQQQAMQLEN ANFVKDWSTC SLQDGIEIPL EQQLQSMSWI
301: LNSDNTTNII TEEHNPIPKR EVECSASSSF GSYPGYFGTG KSSETSFLDE LNTTNGDIKP QLCTNNNIIP YNSNIMQNDI KHHQTYPPPL PHPPVFNLPS
401: NQREYHMNGF FEAPPQPNGT STYNNNNHNQ ARFGSSSSSL PCSISMLDEY LFSQVKKTRK RHSFFSQRSN TFLFPYFNRC SNRTERERFD E
001: MGRVKLKIKK LENTNGRQST FAKRKNGILK KANELSILCD IDIVLLMFSP TGKAAICCGT RSSMEEVIAK FSQVTPQERT KRKFESLENL KKTFQKLDHD
101: VNIREFIASS NSTVEDLSTQ ARILQARISE IHGRLSYWTE PDKINNVEHL GQLEISIRQS LDQLRAHKEH FGQQQQAMQI ENANFVKDWS TCSMQDGIQI
201: PLEQQLQSMS WILNSNTTNI VTEEHNSIPQ REVECSASSS FGSYPGYFGT GKSPEMTIPG QETSFLDELN TGQLKQDTSS QQQFTNNNNI TAYNPNLHND
301: MNHHQTLPPP PLPLTLPHAQ VYIPMNQREY HMNGFFEAPP PDSSAYNDNT NQTRFGSSSS SLPCSISMFD EYLFSQVTKT KLSQRF
101: VNIREFIASS NSTVEDLSTQ ARILQARISE IHGRLSYWTE PDKINNVEHL GQLEISIRQS LDQLRAHKEH FGQQQQAMQI ENANFVKDWS TCSMQDGIQI
201: PLEQQLQSMS WILNSNTTNI VTEEHNSIPQ REVECSASSS FGSYPGYFGT GKSPEMTIPG QETSFLDELN TGQLKQDTSS QQQFTNNNNI TAYNPNLHND
301: MNHHQTLPPP PLPLTLPHAQ VYIPMNQREY HMNGFFEAPP PDSSAYNDNT NQTRFGSSSS SLPCSISMFD EYLFSQVTKT KLSQRF
Arabidopsis Description
AGL30Agamous-like MADS-box protein AGL30 [Source:UniProtKB/Swiss-Prot;Acc:Q1PFA4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.