Skip to main content
crop-pal logo
Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 4
  • mitochondrion 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra017404.1-P Field mustard nucleus 73.12 94.72
CDY60833 Canola nucleus 74.95 86.79
CDY45183 Canola nucleus 60.08 78.25
AT2G03060.2 Thale cress nucleus 61.3 77.98
CDY03021 Canola nucleus 59.67 74.74
CDY24740 Canola nucleus 5.91 45.31
CDX76715 Canola nucleus 5.91 45.31
CDX95922 Canola mitochondrion 32.38 43.56
GSMUA_Achr11P... Banana nucleus 20.16 43.42
GSMUA_Achr3P24170_001 Banana nucleus 30.55 42.02
GSMUA_Achr2P01740_001 Banana nucleus 28.11 40.47
CDY40939 Canola golgi, mitochondrion, plasma membrane, plastid 32.99 38.85
CDY58993 Canola nucleus 29.53 38.26
CDY26732 Canola nucleus 29.12 38.03
CDX76718 Canola nucleus 6.92 36.96
TraesCS4B01G150200.1 Wheat nucleus 29.12 36.76
TraesCS4D01G147000.1 Wheat nucleus 28.92 36.5
HORVU4Hr1G032440.7 Barley nucleus 28.72 36.43
TraesCS4A01G169000.1 Wheat nucleus 28.51 36.18
KXG29049 Sorghum nucleus 27.9 36.15
CDY11489 Canola nucleus 6.52 35.96
Os11t0658700-01 Rice nucleus 28.11 35.2
CDX96703 Canola nucleus 29.33 33.03
CDX83816 Canola nucleus 29.74 28.19
CDY26727 Canola extracellular 11.41 26.79
CDX76713 Canola nucleus 7.94 26.53
CDX69305 Canola nucleus 10.39 25.12
CDX76717 Canola nucleus 8.76 24.29
Zm00001d048697_P003 Maize nucleus, plasma membrane, plastid 24.03 24.03
CDX87492 Canola nucleus 11.2 24.02
CDX88401 Canola nucleus 11.61 23.36
CDY01295 Canola nucleus 14.26 22.51
CDY00423 Canola nucleus 14.26 20.9
CDY41491 Canola nucleus 14.26 20.71
CDX88402 Canola nucleus 13.85 20.67
CDX87489 Canola nucleus 13.85 20.67
CDX91664 Canola nucleus 14.05 20.41
CDY64870 Canola nucleus 8.76 18.07
Protein Annotations
MapMan:15.5.14Gene3D:3.40.1810.10GO:A0A078FXE9UniProt:A0A078FXE9EnsemblPlants:CDY17422ProteinID:CDY17422
ProteinID:CDY17422.1ncoils:CoilGO:GO:0000982GO:GO:0000987GO:GO:0003674GO:GO:0003676
GO:GO:0003677GO:GO:0003700GO:GO:0005488GO:GO:0005515GO:GO:0005575GO:GO:0005622
GO:GO:0005623GO:GO:0005634GO:GO:0006139GO:GO:0006351GO:GO:0006355GO:GO:0008150
GO:GO:0008152GO:GO:0009058GO:GO:0009987GO:GO:0045944GO:GO:0046983EnsemblPlantsGene:GSBRNA2T00095550001
InterPro:IPR002100InterPro:IPR036879InterPro:MADS_SRF-likePFAM:PF00319PRINTS:PR00404PFscan:PS50066
PANTHER:PTHR11945PANTHER:PTHR11945:SF169SMART:SM00432SUPFAM:SSF55455InterPro:TF_MADSboxInterPro:TF_MADSbox_sf
UniParc:UPI0004EE36A0SEG:seg::::
Description
BnaC09g21150DBnaC09g21150D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FXE9]
Coordinates
chrLK032073:-:102933..106347
Molecular Weight (calculated)
55666.2 Da
IEP (calculated)
6.701
GRAVY (calculated)
-0.719
Length
491 amino acids
Sequence
(BLAST)
001: MEIYGGDEKS RARSEEPESL DGGDGSSTER GVYSESFLRV DVEVVEIDKF LTEENSSVGS FSGETFGSHG GEIRFNLFKG KMSCYNRMGR VKLKIKKLEN
101: TNGRQATFAK RKNGILKKAN ELSILCDIDL ILLMFSPGGK PSLCCGRRSS IEEVIAKFSQ VTPEERTKKK VESLETLKKT FLKLDHTVNI RELIASSNST
201: TEDLSTQASI LQARISEIHG RLSYWTELDK INNVDHLGQL EISVRQSLDQ LRAHKEHLGQ QQQQAMQLEN ANFVKDWSTC SLQDGIEIPL EQQLQSMSWI
301: LNSDNTTNII TEEHNPIPKR EVECSASSSF GSYPGYFGTG KSSETSFLDE LNTTNGDIKP QLCTNNNIIP YNSNIMQNDI KHHQTYPPPL PHPPVFNLPS
401: NQREYHMNGF FEAPPQPNGT STYNNNNHNQ ARFGSSSSSL PCSISMLDEY LFSQVKKTRK RHSFFSQRSN TFLFPYFNRC SNRTERERFD E
Best Arabidopsis Sequence Match ( AT2G03060.2 )
(BLAST)
001: MGRVKLKIKK LENTNGRQST FAKRKNGILK KANELSILCD IDIVLLMFSP TGKAAICCGT RSSMEEVIAK FSQVTPQERT KRKFESLENL KKTFQKLDHD
101: VNIREFIASS NSTVEDLSTQ ARILQARISE IHGRLSYWTE PDKINNVEHL GQLEISIRQS LDQLRAHKEH FGQQQQAMQI ENANFVKDWS TCSMQDGIQI
201: PLEQQLQSMS WILNSNTTNI VTEEHNSIPQ REVECSASSS FGSYPGYFGT GKSPEMTIPG QETSFLDELN TGQLKQDTSS QQQFTNNNNI TAYNPNLHND
301: MNHHQTLPPP PLPLTLPHAQ VYIPMNQREY HMNGFFEAPP PDSSAYNDNT NQTRFGSSSS SLPCSISMFD EYLFSQVTKT KLSQRF
Arabidopsis Description
AGL30Agamous-like MADS-box protein AGL30 [Source:UniProtKB/Swiss-Prot;Acc:Q1PFA4]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.