Factsheet for Zm00001d048697_P003

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, plastid, nucleus

Predictor Summary:

nucleus 1
mitochondrion 1
plastid 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plasma membrane, plastid
Any Predictor:	mitochondrion, nucleus, plasma membrane
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG29049	Sorghum	nucleus	50.92	65.96
HORVU4Hr1G032440.7	Barley	nucleus	45.01	57.11
TraesCS4A01G169000.1	Wheat	nucleus	44.6	56.59
TraesCS4D01G147000.1	Wheat	nucleus	44.6	56.3
TraesCS4B01G150200.1	Wheat	nucleus	44.4	56.04
Os11t0658700-01	Rice	nucleus	44.2	55.36
GSMUA_Achr3P24170_001	Banana	nucleus	35.85	49.3
GSMUA_Achr2P01740_001	Banana	nucleus	33.2	47.8
GSMUA_Achr11P...	Banana	nucleus	21.79	46.93
PGSC0003DMT400050265	Potato	nucleus	13.24	45.77
VIT_17s0000g06340.t01	Wine grape	nucleus	31.16	40.8
KRH50568	Soybean	nucleus	27.49	38.35
Bra016544.1-P	Field mustard	nucleus	22.61	36.27
KRH03491	Soybean	nucleus	25.87	35.88
KRH56901	Soybean	nucleus	24.03	34.91
KRG89584	Soybean	nucleus	25.46	33.78
Bra024792.1-P	Field mustard	nucleus	25.46	33.16
Bra031049.1-P	Field mustard	nucleus	25.66	32.98
CDY45183	Canola	nucleus	25.25	32.89
CDY58993	Canola	nucleus	25.25	32.72
CDY26732	Canola	nucleus	25.05	32.71
AT2G03060.2	Thale cress	nucleus	25.46	32.38
KRH70750	Soybean	nucleus	14.66	31.86
CDY03021	Canola	nucleus	25.05	31.38
Bra025685.1-P	Field mustard	nucleus	24.03	31.13
Bra017404.1-P	Field mustard	nucleus	23.83	30.87
Bra004393.1-P	Field mustard	nucleus	21.79	30.66
AT1G69540.2	Thale cress	nucleus	22.81	30.52
AT1G18750.3	Thale cress	nucleus	25.46	30.27
CDX95922	Canola	mitochondrion	22.0	29.59
CDX96703	Canola	nucleus	25.87	29.13
KRH74891	Soybean	endoplasmic reticulum, golgi, mitochondrion, vacuole	22.2	28.31
CDY60833	Canola	nucleus	23.42	27.12
CDY40939	Canola	golgi, mitochondrion, plasma membrane, plastid	22.81	26.86
Solyc03g115910.1.1	Tomato	plastid	22.81	26.86
CDX83816	Canola	nucleus	26.88	25.48
Zm00001d044850_P001	Maize	nucleus	13.65	24.1
CDY17422	Canola	nucleus	24.03	24.03
CDY26727	Canola	extracellular	9.16	21.53
Zm00001d037212_P001	Maize	nucleus	14.87	19.84
CDY64870	Canola	nucleus	8.96	18.49

Protein Annotations

EntrezGene:103652720	MapMan:15.5.14	Gene3D:3.40.1810.10	UniProt:A0A1D6PNS1	ProteinID:AQK48493.1	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0046983
InterPro:IPR002100	InterPro:IPR036879	PFAM:PF00319	PRINTS:PR00404	PFscan:PS50066	PANTHER:PTHR11945
PANTHER:PTHR11945:SF169	SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	TMHMM:TMhelix
UniParc:UPI000842B57C	EnsemblPlantsGene:Zm00001d048697	EnsemblPlants:Zm00001d048697_P003	EnsemblPlants:Zm00001d048697_T003	SEG:seg	:

Description

MADS-transcription factor 40Putative MADS-box transcription factor family protein

Coordinates

chr4:-:3464672..3467995

Molecular Weight (calculated)

54190.2 Da

IEP (calculated)

7.274

GRAVY (calculated)

-0.454

Length

491 amino acids

Sequence
(BLAST)

001: MQSNCLALDA APRKKTTRWA CDPDTAVAIG VISALTLLVV VLAMGRVKLK IKRLENNSGR QVTYSKRRSG ILKKAKELSI LCDIDLMLIM FSPTDKPTIC
101: IGDRSTLEEV VAKYTQLTPQ ERAKRKLESL EVIYLNRQIF RHGFSLDTNL NCCAQKGSKE DFQETRPRCK YSRLSRLAGS DSRGAISRAC LVAGSGGGAS
201: KACQCRCDFP FMTHDPVKCS PRCESMALIS LDWSDPEKVD NIDNIRAMEQ SLKETINHIQ IHKGNFGKQH LIGLQYAATQ FQTDMQLPLG LPGESGPSSW
301: FQNGGADGQQ AMMLTDESGL LHQRDIAQGY PSYFSTVKQD PDTGGSSSDH GQVVLHHPQP PDFSQTECLT SLHLPSQQFP YPPFDHHGLY SDRIFRPDAV
401: ELHAGGVASM DFLSGQYDLP RPGDDASFHN WASAAACSAT MFDQQQQQQH QHHQQPQSSP AQLPAATTLA TASFDHAVYH SSSQHQQVMI G

Best Arabidopsis Sequence Match ( AT1G18750.3 )
(BLAST)

001: MGRVKLKIKR LESTSNRQVT YTKRKNGILK KAKELSILCD IDIVLLMFSP TGRATAFHGE HSCIEEVISK FAQLTPQERT KRKLESLEAL KKTFKKLDHD
101: VNIHDFLGAR NQTIEVWIDH LRFMNFLGYF LISLSQIAKV CVNITTRQGL SNQVAIYQAQ LMECHRRLSC WTNIDRIENT EHLDLLEESL RKSIERIQIH
201: KEHYRKNQLL PIECATTQFH SGIQLPMAMG GNSSMQEAHS MSWLPDNDHQ QTILPGDSSF LPHREMDGSI PVYSSCFFES TKPEDQICSN PGQQFEQLEQ
301: QGNGCLGLQQ LGEEYSYPTP FGTTLGMEED QEKKIKSEME LNNLQQQQQQ QQQQQQQDPS MYDPMANNNG GCFQIPHDQS MFVNDHHHHH HHHHQNWVPD
401: SMFGQTSYNQ QPN

Arabidopsis Description

AGL65AGAMOUS-like 65 [Source:TAIR;Acc:AT1G18750]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.