Factsheet for PGSC0003DMT400050265

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 5
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400086843	Potato	nucleus	21.13	36.59
PGSC0003DMT400067393	Potato	nucleus	21.83	32.98
Solyc03g115910.1.1	Tomato	plastid	80.28	27.34
PGSC0003DMT400096271	Potato	nucleus	27.46	25.83
GSMUA_Achr11P...	Banana	nucleus	40.85	25.44
PGSC0003DMT400067385	Potato	nucleus	27.46	25.16
Bra016544.1-P	Field mustard	nucleus	50.0	23.2
KRH56901	Soybean	nucleus	54.23	22.78
KRH03491	Soybean	nucleus	54.93	22.03
VIT_17s0000g06340.t01	Wine grape	nucleus	55.63	21.07
KXG29049	Sorghum	nucleus	51.41	19.26
CDY26732	Canola	nucleus	50.7	19.15
Bra025685.1-P	Field mustard	nucleus	50.7	19.0
PGSC0003DMT400094997	Potato	nucleus	20.42	18.35
Bra031049.1-P	Field mustard	nucleus	49.3	18.32
GSMUA_Achr3P24170_001	Banana	nucleus	45.77	18.21
CDY58993	Canola	nucleus	48.59	18.21
GSMUA_Achr2P01740_001	Banana	nucleus	42.96	17.89
HORVU4Hr1G032440.7	Barley	nucleus	48.59	17.83
TraesCS4A01G169000.1	Wheat	nucleus	48.59	17.83
TraesCS4B01G150200.1	Wheat	nucleus	48.59	17.74
TraesCS4D01G147000.1	Wheat	nucleus	48.59	17.74
AT1G18750.3	Thale cress	nucleus	49.3	16.95
Os11t0658700-01	Rice	nucleus	45.07	16.33
CDX96703	Canola	nucleus	48.59	15.83
CDX83816	Canola	nucleus	50.0	13.71
Zm00001d048697_P003	Maize	nucleus, plasma membrane, plastid	45.77	13.24

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0046983	InterPro:IPR002100	InterPro:IPR036879	UniProt:M1BQ16	PFAM:PF00319	EnsemblPlantsGene:PGSC0003DMG400019525
PGSC:PGSC0003DMG400019525	EnsemblPlants:PGSC0003DMT400050265	PRINTS:PR00404	PFscan:PS50066	PANTHER:PTHR11945	PANTHER:PTHR11945:SF156
SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI00029698CD	:

Description

MADS-box family protein [Source:PGSC_GENE;Acc:PGSC0003DMG400019525]

Coordinates

chr3:-:55765548..55767778

Molecular Weight (calculated)

16052.7 Da

IEP (calculated)

10.436

GRAVY (calculated)

-0.208

Length

142 amino acids

Sequence
(BLAST)

001: MGRVRLSMKR VESNSKRQST YCKRRCGILK KAQEISVLCD IDIILLLFSP TGKPTLLQGG TSNFDEIIAK FAQLTPQERA KSWWSNHDKI NKVQDLALME
101: CALRESLNAV HVRKVIFPKT GLVLVVLGDP SAATSFRKQP YY

Best Arabidopsis Sequence Match ( AT1G18750.3 )
(BLAST)

001: MGRVKLKIKR LESTSNRQVT YTKRKNGILK KAKELSILCD IDIVLLMFSP TGRATAFHGE HSCIEEVISK FAQLTPQERT KRKLESLEAL KKTFKKLDHD
101: VNIHDFLGAR NQTIEVWIDH LRFMNFLGYF LISLSQIAKV CVNITTRQGL SNQVAIYQAQ LMECHRRLSC WTNIDRIENT EHLDLLEESL RKSIERIQIH
201: KEHYRKNQLL PIECATTQFH SGIQLPMAMG GNSSMQEAHS MSWLPDNDHQ QTILPGDSSF LPHREMDGSI PVYSSCFFES TKPEDQICSN PGQQFEQLEQ
301: QGNGCLGLQQ LGEEYSYPTP FGTTLGMEED QEKKIKSEME LNNLQQQQQQ QQQQQQQDPS MYDPMANNNG GCFQIPHDQS MFVNDHHHHH HHHHQNWVPD
401: SMFGQTSYNQ QPN

Arabidopsis Description

AGL65AGAMOUS-like 65 [Source:TAIR;Acc:AT1G18750]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.