Factsheet for Solyc03g115910.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 5
plastid 5
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400050265	Potato	nucleus	27.34	80.28
VIT_17s0000g06340.t01	Wine grape	nucleus	38.13	42.4
KRH56901	Soybean	nucleus	31.41	38.76
GSMUA_Achr11P...	Banana	nucleus	20.86	38.16
KRH03491	Soybean	nucleus	32.37	38.14
GSMUA_Achr3P24170_001	Banana	nucleus	31.65	36.97
GSMUA_Achr2P01740_001	Banana	nucleus	30.22	36.95
KXG29049	Sorghum	nucleus	30.22	33.25
CDY58993	Canola	nucleus	29.5	32.45
CDY26732	Canola	nucleus	29.02	32.18
HORVU4Hr1G032440.7	Barley	nucleus	29.74	32.04
Bra031049.1-P	Field mustard	nucleus	29.26	31.94
TraesCS4D01G147000.1	Wheat	nucleus	29.5	31.62
TraesCS4B01G150200.1	Wheat	nucleus	29.5	31.62
TraesCS4A01G169000.1	Wheat	nucleus	29.26	31.52
Bra016544.1-P	Field mustard	nucleus	22.78	31.05
Bra025685.1-P	Field mustard	nucleus	27.58	30.34
Os11t0658700-01	Rice	nucleus	28.3	30.1
AT1G18750.3	Thale cress	nucleus	29.5	29.78
Solyc06g033830.1.1	Tomato	nucleus	7.91	29.2
CDX96703	Canola	nucleus	29.26	27.98
CDX83816	Canola	nucleus	29.98	24.13
Zm00001d048697_P003	Maize	nucleus, plasma membrane, plastid	26.86	22.81
Solyc06g048380.1.1	Tomato	cytosol	9.59	22.73
Solyc04g078300.2.1	Tomato	nucleus	17.51	21.86
Solyc07g052700.2.1	Tomato	nucleus	8.87	19.47
Solyc06g033820.1.1	Tomato	cytosol, nucleus, plasma membrane	9.11	19.39
Solyc07g052720.2.1	Tomato	cytosol, nucleus, plastid	6.0	16.03
Solyc05g051830.2.1	Tomato	nucleus	14.63	15.68

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0046983	InterPro:IPR002100	InterPro:IPR036879
UniProt:K4BL93	PFAM:PF00319	PRINTS:PR00404	PFscan:PS50066	PANTHER:PTHR11945	PANTHER:PTHR11945:SF156
SMART:SM00432	SUPFAM:SSF55455	EnsemblPlantsGene:Solyc03g115910.1	EnsemblPlants:Solyc03g115910.1.1	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf
TMHMM:TMhelix	UniParc:UPI0002768B50	:	:	:	:

Description

No Description!

Coordinates

chr3:-:65493107..65498198

Molecular Weight (calculated)

47277.7 Da

IEP (calculated)

5.822

GRAVY (calculated)

-0.275

Length

417 amino acids

Sequence
(BLAST)

001: MASFACVFCP LEFHISEPLP AFKLGSCPTS NPKFQSAPIC FFHRMGRVRL SVKRLESHSN RQSTYCKRRC GILKKAQEIS VLCDIDIILL LFSPTGKPTL
101: FQGGQSNFDE IIAKFAQLTP QERAKRKLES LEVSLIFITT MCSPLAMLCC YFIIQVKVIT MLMVTLQTLR KTFKKLDNDI GVPEFLDASD PSVEELHSQV
201: KLLQSRLTDV EMRLNWWSNP DNINKVEDFA LMECALRESL NAVHVRKLQK TTHLHLLMNS ELDGNTHQWH PENKILRMPF PQTPNILPQE NMGYFGDNSV
301: AESSHVQGSG EVDQARQDTT AMLDNGVLND LTSIACLRQQ LSEQYSYNPN EDLDLLERNM LDPQSDANLK GYLMDYAFQR NFNLTRSVDS VNYSAVDAVA
401: VPDFDEKSYA QPATSSD

Best Arabidopsis Sequence Match ( AT1G18750.1 )
(BLAST)

001: MGRVKLKIKR LESTSNRQVT YTKRKNGILK KAKELSILCD IDIVLLMFSP TGRATAFHGE HSCIEEVISK FAQLTPQERT KRKLESLEAL KKTFKKLDHD
101: VNIHDFLGAR NQTIEGLSNQ VAIYQAQLME CHRRLSCWTN IDRIENTEHL DLLEESLRKS IERIQIHKEH YRKNQLLPIE CATTQFHSGI QLPMAMGGNS
201: SMQEAHSMSW LPDNDHQQTI LPGDSSFLPH REMDGSIPVY SSCFFESTKP EDQICSNPGQ QFEQLEQQGN GCLGLQQLGE EYSYPTPFGT TLGMEEDQEK
301: KIKSEMELNN LQQQQQQQQQ QQQQDPSMYD PMANNNGGCF QIPHDQSMFV NDHHHHHHHH HQNWVPDSMF GQTSYNQVCV FTPPLELSR

Arabidopsis Description

AGL65AGAMOUS-like 65 [Source:TAIR;Acc:AT1G18750]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.