Factsheet for Solyc04g078300.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_18s0001g09540.t01	Wine grape	nucleus	60.48	62.73
PGSC0003DMT400086843	Potato	nucleus	12.87	52.44
KRH61376	Soybean	nucleus	38.62	39.69
Solyc06g033830.1.1	Tomato	nucleus	13.17	38.94
Bra011763.1-P	Field mustard	mitochondrion	17.96	34.29
AT4G37435.1	Thale cress	nucleus	18.56	33.33
CDX69305	Canola	nucleus	18.56	30.54
PGSC0003DMT400094997	Potato	nucleus	14.07	29.75
Solyc06g048380.1.1	Tomato	cytosol	14.97	28.41
Solyc07g052700.2.1	Tomato	nucleus	15.27	26.84
Solyc06g033820.1.1	Tomato	cytosol, nucleus, plasma membrane	14.67	25.0
Solyc05g051830.2.1	Tomato	nucleus	25.15	21.59
Solyc07g052720.2.1	Tomato	cytosol, nucleus, plastid	9.88	21.15
Solyc03g115910.1.1	Tomato	plastid	21.86	17.51

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	ncoils:Coil	GO:GO:0000977	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0045944	GO:GO:0046983	InterPro:IPR002100	InterPro:IPR036879
UniProt:K4BUR7	InterPro:MADS_MEF2-like	PFAM:PF00319	PRINTS:PR00404	ScanProsite:PS00350	PFscan:PS50066
PANTHER:PTHR11945	PANTHER:PTHR11945:SF224	SMART:SM00432	SUPFAM:SSF55455	EnsemblPlantsGene:Solyc04g078300.2	EnsemblPlants:Solyc04g078300.2.1
InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI0002766A2D	:	:	:

Description

No Description!

Coordinates

chr4:+:63058190..63061625

Molecular Weight (calculated)

38132.9 Da

IEP (calculated)

5.962

GRAVY (calculated)

-0.664

Length

334 amino acids

Sequence
(BLAST)

001: MGRVKLQIKK IENTTNRQVT FSKRRNGLIK KAYELSVLCD VDVALIMFSP SGRVSTFSGN KSIEDIMARY VNLPEHDRGR LHNQEHLQRA IAKLKCEADR
101: TYQAPSSPSS VDSHIEEFQQ EIIRYKTQVE DMERRLRMYE GGFCEITTVC EAQYREEILQ ETLKQVQARK QVLEENYHSP QTQNTTQPQM DFSGQNVNMV
201: NNVATSDAIA NSTFMDWVPH SQRDPHVQIL NFLDSSGLLP FRDEADQHML PPSLNQLHGV NVPAGTDHLS SNSRFDQNNP PRPSSFDGII DVNNAPWPPL
301: YTTGDDPFPV SQPRERAILE LFLSQLTPVN QDHI

Best Arabidopsis Sequence Match ( AT1G22130.1 )
(BLAST)

001: MGRVKLEIKR IENTTNRQVT FSKRRNGLIK KAYELSILCD IDIALIMFSP SDRLSLFSGK TRIEDVFSRF INLPKQERES ALYFPDQNRR PDIQNKECLL
101: RILQQLKTEN DIALQVTNPA AINSDVEELE HEVCRLQQQL QMAEEELRRY EPDPIRFTTM EEYEVSEKQL LDTLTHVVQR RDHLMSNHLS SYEASTMQPN
201: IGGPFVNDVV EGWLPENGTN QTHLFDASAH SNQLRELSSA MYEPLLQGSS SSSNQNNMSE CHVTNHNGEM FPEWAQAYSS SALFASMQQQ HEGVGPSIEE
301: MMPAQQSDIP GVTAETQVDH EVSDYETKVP QLSSQ

Arabidopsis Description

AGL104Agamous-like MADS-box protein AGL104 [Source:UniProtKB/Swiss-Prot;Acc:Q9LM46]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.