Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400094997 | Potato | nucleus | 80.49 | 41.77 |
| VIT_18s0001g04810.t01 | Wine grape | nucleus | 43.9 | 37.11 |
| PGSC0003DMT400067393 | Potato | nucleus | 40.24 | 35.11 |
| PGSC0003DMT400067385 | Potato | nucleus | 41.46 | 21.94 |
| PGSC0003DMT400050265 | Potato | nucleus | 36.59 | 21.13 |
| PGSC0003DMT400096271 | Potato | nucleus | 37.8 | 20.53 |
| Bra011763.1-P | Field mustard | mitochondrion | 37.8 | 17.71 |
| AT4G37435.1 | Thale cress | nucleus | 39.02 | 17.2 |
| CDX69305 | Canola | nucleus | 40.24 | 16.26 |
| KRH61376 | Soybean | nucleus | 52.44 | 13.23 |
| Solyc04g078300.2.1 | Tomato | nucleus | 52.44 | 12.87 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0046983 | InterPro:IPR002100 | InterPro:IPR036879 | UniProt:M1DCL7 | PFAM:PF00319 | EnsemblPlantsGene:PGSC0003DMG400036414 |
| PGSC:PGSC0003DMG400036414 | EnsemblPlants:PGSC0003DMT400086843 | PRINTS:PR00404 | PFscan:PS50066 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF154 |
| SMART:SM00432 | SUPFAM:SSF55455 | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | UniParc:UPI0002952129 | SEG:seg |
Description
MADS-box transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400036414]
Coordinates
chr4:+:52111872..52112228
Molecular Weight (calculated)
9610.0 Da
IEP (calculated)
10.529
GRAVY (calculated)
-0.254
Length
82 amino acids
Sequence
(BLAST)
(BLAST)
1: MGRKIEIKKI EDIIKRQVTF SKRRSSLLKK AKEIAISCDV DVLLVAFSPA NRLSKFCSQN RIEDILQRYI ELPIERKLTY VN
001: MGRVKLEIKR IENTTNRQVT FSKRRNGLIK KAYELSILCD IDIALIMFSP SDRLSLFSGK TRIEDVFSRF INLPKQERES ALYFPDQNRR PDIQNKECLL
101: RILQQLKTEN DIALQVTNPA AINSDVEELE HEVCRLQQQL QMAEEELRRY EPDPIRFTTM EEYEVSEKQL LDTLTHVVQR RDHLMSNHLS SYEASTMQPN
201: IGGPFVNDVV EGWLPENGTN QTHLFDASAH SNQLRELSSA MYEPLLQGSS SSSNQNNMSE CHVTNHNGEM FPEWAQAYSS SALFASMQQQ HEGVGPSIEE
301: MMPAQQSDIP GVTAETQVDH EVSDYETKVP QLSSQ
101: RILQQLKTEN DIALQVTNPA AINSDVEELE HEVCRLQQQL QMAEEELRRY EPDPIRFTTM EEYEVSEKQL LDTLTHVVQR RDHLMSNHLS SYEASTMQPN
201: IGGPFVNDVV EGWLPENGTN QTHLFDASAH SNQLRELSSA MYEPLLQGSS SSSNQNNMSE CHVTNHNGEM FPEWAQAYSS SALFASMQQQ HEGVGPSIEE
301: MMPAQQSDIP GVTAETQVDH EVSDYETKVP QLSSQ
Arabidopsis Description
AGL104Agamous-like MADS-box protein AGL104 [Source:UniProtKB/Swiss-Prot;Acc:Q9LM46]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.