Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 3
- nucleus 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra011763.1-P | Field mustard | mitochondrion | 82.27 | 95.43 |
| VIT_07s0129g00650.t01 | Wine grape | cytosol | 15.27 | 50.0 |
| AT4G37435.1 | Thale cress | nucleus | 40.39 | 44.09 |
| CDX76715 | Canola | nucleus | 13.79 | 43.75 |
| CDY24740 | Canola | nucleus | 13.79 | 43.75 |
| PGSC0003DMT400086843 | Potato | nucleus | 16.26 | 40.24 |
| CDY11489 | Canola | nucleus | 14.78 | 33.71 |
| CDX76718 | Canola | nucleus | 15.27 | 33.7 |
| CDX87492 | Canola | nucleus | 28.08 | 24.89 |
| CDX76713 | Canola | nucleus | 16.75 | 23.13 |
| PGSC0003DMT400094997 | Potato | nucleus | 17.24 | 22.15 |
| CDX88401 | Canola | nucleus | 26.11 | 21.72 |
| CDX76717 | Canola | nucleus | 18.23 | 20.9 |
| Solyc04g078300.2.1 | Tomato | nucleus | 30.54 | 18.56 |
| KRH61376 | Soybean | nucleus | 29.56 | 18.46 |
| CDY01295 | Canola | nucleus | 27.59 | 18.01 |
| CDX91664 | Canola | nucleus | 28.57 | 17.16 |
| CDY41491 | Canola | nucleus | 28.57 | 17.16 |
| CDX87489 | Canola | nucleus | 27.59 | 17.02 |
| CDX88402 | Canola | nucleus | 27.59 | 17.02 |
| CDY00423 | Canola | nucleus | 28.08 | 17.01 |
| CDY45183 | Canola | nucleus | 25.12 | 13.53 |
| CDY03021 | Canola | nucleus | 24.14 | 12.5 |
| CDY58993 | Canola | nucleus | 22.66 | 12.14 |
| CDX95922 | Canola | mitochondrion | 21.67 | 12.05 |
| CDY60833 | Canola | nucleus | 25.12 | 12.03 |
| CDY26732 | Canola | nucleus | 21.18 | 11.44 |
| CDY40939 | Canola | golgi, mitochondrion, plasma membrane, plastid | 22.17 | 10.79 |
| CDY17422 | Canola | nucleus | 25.12 | 10.39 |
| CDX96703 | Canola | nucleus | 21.67 | 10.09 |
| CDX83816 | Canola | nucleus | 22.17 | 8.69 |
| CDY26727 | Canola | extracellular | 5.42 | 5.26 |
| CDY64870 | Canola | nucleus | 3.94 | 3.36 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | GO:A0A078BWX2 | EnsemblPlants:CDX69305 | ProteinID:CDX69305 | ProteinID:CDX69305.1 |
| ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0046983 | EnsemblPlantsGene:GSBRNA2T00131136001 | InterPro:IPR002100 | InterPro:IPR036879 | PFAM:PF00319 | PRINTS:PR00404 |
| PFscan:PS50066 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF154 | SMART:SM00432 | SUPFAM:SSF55455 | InterPro:TF_MADSbox |
| InterPro:TF_MADSbox_sf | UniParc:UPI0004EE813D | : | : | : | : |
Description
BnaC01g01480D
Coordinates
chrLK031789:-:4046891..4048379
Molecular Weight (calculated)
23915.0 Da
IEP (calculated)
8.883
GRAVY (calculated)
-0.560
Length
203 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRVKIQMRK IVDRQQRNIA FAKRKSGLLK KAYELFILCD VQMVLIFFSP SGKLFLFDTK TRMEETIKKY VDVPIRPRLQ VQEEAFIRRW IDIMRIESQY
101: PESIVRPREN FGDGILSQAR SKEIEDEISK CKAEMAKVEQ QLGYFLKHPN QWTTRDDIEY QEKILEETLD KVRSRKKCLE AQNEAFDASN CLLQTDVEIS
201: PSG
101: PESIVRPREN FGDGILSQAR SKEIEDEISK CKAEMAKVEQ QLGYFLKHPN QWTTRDDIEY QEKILEETLD KVRSRKKCLE AQNEAFDASN CLLQTDVEIS
201: PSG
001: MGRVKIQIKR INDRQQRNIA FAKRKNGLLK KAYELFVLCN VPVALILFSP SGKLFVFYAK ERPEEIICKF LARAVRTRLP HEPNIQRLVM QMRSETKCSD
101: ESLDDGLRYL IQPKEIEDEI EEVNARLAEV EKQLERFLEI PDQWESLAEL KRREEDFQKT LDIVQSRKRD LKPGNFVSGI KKFLRI
101: ESLDDGLRYL IQPKEIEDEI EEVNARLAEV EKQLERFLEI PDQWESLAEL KRREEDFQKT LDIVQSRKRD LKPGNFVSGI KKFLRI
Arabidopsis Description
MADS-box transcription factor-like protein [Source:UniProtKB/TrEMBL;Acc:A0A1P8B5J4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.