Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra017404.1-P | Field mustard | nucleus | 85.38 | 95.51 |
| AT2G03060.2 | Thale cress | nucleus | 71.7 | 78.76 |
| CDY45183 | Canola | nucleus | 69.34 | 77.98 |
| CDY03021 | Canola | nucleus | 69.34 | 75.0 |
| CDY17422 | Canola | nucleus | 86.79 | 74.95 |
| CDY24740 | Canola | nucleus | 6.6 | 43.75 |
| CDX76715 | Canola | nucleus | 6.6 | 43.75 |
| CDX95922 | Canola | mitochondrion | 37.5 | 43.56 |
| GSMUA_Achr11P... | Banana | nucleus | 22.88 | 42.54 |
| GSMUA_Achr3P24170_001 | Banana | nucleus | 34.67 | 41.18 |
| GSMUA_Achr2P01740_001 | Banana | nucleus | 32.08 | 39.88 |
| CDY58993 | Canola | nucleus | 34.43 | 38.52 |
| CDY26732 | Canola | nucleus | 33.73 | 38.03 |
| CDY40939 | Canola | golgi, mitochondrion, plasma membrane, plastid | 36.79 | 37.41 |
| TraesCS4B01G150200.1 | Wheat | nucleus | 33.25 | 36.25 |
| KXG29049 | Sorghum | nucleus | 32.31 | 36.15 |
| TraesCS4D01G147000.1 | Wheat | nucleus | 33.02 | 35.99 |
| HORVU4Hr1G032440.7 | Barley | nucleus | 32.78 | 35.92 |
| CDX76718 | Canola | nucleus | 7.78 | 35.87 |
| TraesCS4A01G169000.1 | Wheat | nucleus | 32.55 | 35.66 |
| CDY11489 | Canola | nucleus | 7.31 | 34.83 |
| Os11t0658700-01 | Rice | nucleus | 32.08 | 34.69 |
| CDX96703 | Canola | nucleus | 33.96 | 33.03 |
| CDX83816 | Canola | nucleus | 33.96 | 27.8 |
| CDY26727 | Canola | extracellular | 13.21 | 26.79 |
| CDX76713 | Canola | nucleus | 8.96 | 25.85 |
| CDX69305 | Canola | nucleus | 12.03 | 25.12 |
| CDX76717 | Canola | nucleus | 9.91 | 23.73 |
| CDX87492 | Canola | nucleus | 12.74 | 23.58 |
| Zm00001d048697_P003 | Maize | nucleus, plasma membrane, plastid | 27.12 | 23.42 |
| CDX88401 | Canola | nucleus | 13.21 | 22.95 |
| CDY01295 | Canola | nucleus | 16.27 | 22.19 |
| CDY41491 | Canola | nucleus | 16.75 | 21.01 |
| CDX88402 | Canola | nucleus | 16.27 | 20.97 |
| CDX87489 | Canola | nucleus | 16.27 | 20.97 |
| CDY00423 | Canola | nucleus | 16.51 | 20.9 |
| CDX91664 | Canola | nucleus | 16.51 | 20.71 |
| CDY64870 | Canola | nucleus | 9.91 | 17.65 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | GO:A0A078J9R3 | UniProt:A0A078J9R3 | EnsemblPlants:CDY60833 | ProteinID:CDY60833 |
| ProteinID:CDY60833.1 | GO:GO:0000982 | GO:GO:0000987 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0045944 | GO:GO:0046983 | EnsemblPlantsGene:GSBRNA2T00030112001 | InterPro:IPR002100 |
| InterPro:IPR036879 | InterPro:MADS_SRF-like | PFAM:PF00319 | PRINTS:PR00404 | PFscan:PS50066 | PANTHER:PTHR11945 |
| PANTHER:PTHR11945:SF169 | SMART:SM00432 | SUPFAM:SSF55455 | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | UniParc:UPI0004EE62D3 |
| SEG:seg | : | : | : | : | : |
Description
BnaA09g53680DBnaA09g53680D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J9R3]
Coordinates
chrLK033919:-:21270..23712
Molecular Weight (calculated)
48026.7 Da
IEP (calculated)
7.992
GRAVY (calculated)
-0.648
Length
424 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRVKLKIKK LENTNGRQAT FAKRKNGILK KANELSILCD IDLILLMFSP GGKASLCCGR RSSIEEVISK FSQVTPEERT KKKVESLETL KKTFLKLDHT
101: VNIRELIASS NSTTEDLSTQ ASVLQARISE IHGRLSYWTE VDKINNVDHL GQLEISIRQS LDQLRAHKEH LGQQQQQQAM QIENANFVKD WSTCSLQDGI
201: EIPLEQHLQS MSWVLNSDNT TNIITEEHNP IPKREVECSA SSSFGSYPGY FGTGKSSETS FLDELNTTNG DIKPQLCTNN NNIIPYNPNI MQNDIKHHQT
301: YPPPPLPPPP LFNLPMNQRE YHMNGFFEAP PQPHGTSAYN NNNNQARFGS SSSSLPCSIS MLDEYLFSQV KTKETLFSSS NIIKVKSNIC FIHYFNRCSN
401: RTDDDRTSHG RSHPFFFVQK QQAN
101: VNIRELIASS NSTTEDLSTQ ASVLQARISE IHGRLSYWTE VDKINNVDHL GQLEISIRQS LDQLRAHKEH LGQQQQQQAM QIENANFVKD WSTCSLQDGI
201: EIPLEQHLQS MSWVLNSDNT TNIITEEHNP IPKREVECSA SSSFGSYPGY FGTGKSSETS FLDELNTTNG DIKPQLCTNN NNIIPYNPNI MQNDIKHHQT
301: YPPPPLPPPP LFNLPMNQRE YHMNGFFEAP PQPHGTSAYN NNNNQARFGS SSSSLPCSIS MLDEYLFSQV KTKETLFSSS NIIKVKSNIC FIHYFNRCSN
401: RTDDDRTSHG RSHPFFFVQK QQAN
001: MGRVKLKIKK LENTNGRQST FAKRKNGILK KANELSILCD IDIVLLMFSP TGKAAICCGT RSSMEEVIAK FSQVTPQERT KRKFESLENL KKTFQKLDHD
101: VNIREFIASS NSTVEDLSTQ ARILQARISE IHGRLSYWTE PDKINNVEHL GQLEISIRQS LDQLRAHKEH FGQQQQAMQI ENANFVKDWS TCSMQDGIQI
201: PLEQQLQSMS WILNSNTTNI VTEEHNSIPQ REVECSASSS FGSYPGYFGT GKSPEMTIPG QETSFLDELN TGQLKQDTSS QQQFTNNNNI TAYNPNLHND
301: MNHHQTLPPP PLPLTLPHAQ VYIPMNQREY HMNGFFEAPP PDSSAYNDNT NQTRFGSSSS SLPCSISMFD EYLFSQVTKT KLSQRF
101: VNIREFIASS NSTVEDLSTQ ARILQARISE IHGRLSYWTE PDKINNVEHL GQLEISIRQS LDQLRAHKEH FGQQQQAMQI ENANFVKDWS TCSMQDGIQI
201: PLEQQLQSMS WILNSNTTNI VTEEHNSIPQ REVECSASSS FGSYPGYFGT GKSPEMTIPG QETSFLDELN TGQLKQDTSS QQQFTNNNNI TAYNPNLHND
301: MNHHQTLPPP PLPLTLPHAQ VYIPMNQREY HMNGFFEAPP PDSSAYNDNT NQTRFGSSSS SLPCSISMFD EYLFSQVTKT KLSQRF
Arabidopsis Description
AGL30Agamous-like MADS-box protein AGL30 [Source:UniProtKB/Swiss-Prot;Acc:Q1PFA4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.