Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 2
Predictors | GFP | MS/MS | Papers | ||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
CDY45183 | Canola | nucleus | 93.11 | 96.82 |
Bra024792.1-P | Field mustard | nucleus | 92.86 | 96.55 |
AT2G03060.2 | Thale cress | nucleus | 77.81 | 79.02 |
CDY60833 | Canola | nucleus | 75.0 | 69.34 |
CDY17422 | Canola | nucleus | 74.74 | 59.67 |
CDX76715 | Canola | nucleus | 7.65 | 46.88 |
CDY24740 | Canola | nucleus | 7.14 | 43.75 |
CDX95922 | Canola | mitochondrion | 39.29 | 42.19 |
GSMUA_Achr3P24170_001 | Banana | nucleus | 36.99 | 40.62 |
GSMUA_Achr11P... | Banana | nucleus | 22.96 | 39.47 |
CDY11489 | Canola | nucleus | 8.93 | 39.33 |
GSMUA_Achr2P01740_001 | Banana | nucleus | 33.42 | 38.42 |
KXG29049 | Sorghum | nucleus | 36.48 | 37.73 |
CDY58993 | Canola | nucleus | 35.97 | 37.2 |
CDX76718 | Canola | nucleus | 8.67 | 36.96 |
TraesCS4B01G150200.1 | Wheat | nucleus | 35.97 | 36.25 |
CDY26732 | Canola | nucleus | 34.69 | 36.17 |
TraesCS4D01G147000.1 | Wheat | nucleus | 35.71 | 35.99 |
TraesCS4A01G169000.1 | Wheat | nucleus | 35.46 | 35.92 |
HORVU4Hr1G032440.7 | Barley | nucleus | 35.46 | 35.92 |
CDY40939 | Canola | golgi, mitochondrion, plasma membrane, plastid | 38.01 | 35.73 |
Os11t0658700-01 | Rice | nucleus | 34.69 | 34.69 |
CDX96703 | Canola | nucleus | 35.71 | 32.11 |
CDY26727 | Canola | extracellular | 15.56 | 29.19 |
CDX76713 | Canola | nucleus | 10.71 | 28.57 |
CDX83816 | Canola | nucleus | 36.48 | 27.61 |
CDX87492 | Canola | nucleus | 15.82 | 27.07 |
CDX76717 | Canola | nucleus | 11.73 | 25.99 |
CDX88401 | Canola | nucleus | 15.82 | 25.41 |
Zm00001d048697_P003 | Maize | nucleus, plasma membrane, plastid | 31.38 | 25.05 |
CDY01295 | Canola | nucleus | 19.64 | 24.76 |
CDX69305 | Canola | nucleus | 12.5 | 24.14 |
CDY00423 | Canola | nucleus | 20.41 | 23.88 |
CDY41491 | Canola | nucleus | 20.41 | 23.67 |
CDX91664 | Canola | nucleus | 19.9 | 23.08 |
CDX87489 | Canola | nucleus | 18.88 | 22.49 |
CDX88402 | Canola | nucleus | 18.62 | 22.19 |
CDY64870 | Canola | nucleus | 10.46 | 17.23 |
Protein Annotations
MapMan:15.5.14 | Gene3D:3.40.1810.10 | GO:A0A078EPC8 | EnsemblPlants:CDY03021 | ProteinID:CDY03021 | ProteinID:CDY03021.1 |
GO:GO:0000982 | GO:GO:0000987 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 |
GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
GO:GO:0009987 | GO:GO:0045944 | GO:GO:0046983 | EnsemblPlantsGene:GSBRNA2T00115333001 | InterPro:IPR002100 | InterPro:IPR036879 |
InterPro:MADS_SRF-like | PFAM:PF00319 | PRINTS:PR00404 | PFscan:PS50066 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF169 |
SMART:SM00432 | SUPFAM:SSF55455 | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | UniParc:UPI0004EE7D02 | SEG:seg |
Description
BnaC07g22060D
Coordinates
chrLK031939:-:411943..414629
Molecular Weight (calculated)
44383.6 Da
IEP (calculated)
7.413
GRAVY (calculated)
-0.530
Length
392 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRVKLKIKK LENTAGRQAT FAKRKNGILK KASELSVLCD IDLVLLMFSP TGKPSLCCAQ RSSIEKVIAK FSQVTPEERA KRKIEGLEVL KKTFQKLDHH
101: VNIRDFIFSS NPTTEDLSAR ARILQDRISE IHGRLRYWTE PDKINNVEDL GQLEISIRQS LDQLRAHKEH FGQQQHAMQI ENANFVKDWS TSLLQDGIQI
201: PLEQQLQSMP WILNTNTTNI VTEEHNSIPQ REVECSASSS FGSYPGYFGT GKSPEITISG QDTSFLDDLT NGHLKPQTIT QQQFTENSVI PYVPSLQNDL
301: NHHQTLPLPL PLPHPPPVFN FPMNQREYHM NGFFEAPPPG SSVYNNTANQ ARFGSNSSSL PCSISMLDEY LFSQVKHHNF CSDSRYGFLL ST
101: VNIRDFIFSS NPTTEDLSAR ARILQDRISE IHGRLRYWTE PDKINNVEDL GQLEISIRQS LDQLRAHKEH FGQQQHAMQI ENANFVKDWS TSLLQDGIQI
201: PLEQQLQSMP WILNTNTTNI VTEEHNSIPQ REVECSASSS FGSYPGYFGT GKSPEITISG QDTSFLDDLT NGHLKPQTIT QQQFTENSVI PYVPSLQNDL
301: NHHQTLPLPL PLPHPPPVFN FPMNQREYHM NGFFEAPPPG SSVYNNTANQ ARFGSNSSSL PCSISMLDEY LFSQVKHHNF CSDSRYGFLL ST
001: MGRVKLKIKK LENTNGRQST FAKRKNGILK KANELSILCD IDIVLLMFSP TGKAAICCGT RSSMEEVIAK FSQVTPQERT KRKFESLENL KKTFQKLDHD
101: VNIREFIASS NSTVEDLSTQ ARILQARISE IHGRLSYWTE PDKINNVEHL GQLEISIRQS LDQLRAHKEH FGQQQQAMQI ENANFVKDWS TCSMQDGIQI
201: PLEQQLQSMS WILNSNTTNI VTEEHNSIPQ REVECSASSS FGSYPGYFGT GKSPEMTIPG QETSFLDELN TGQLKQDTSS QQQFTNNNNI TAYNPNLHND
301: MNHHQTLPPP PLPLTLPHAQ VYIPMNQREY HMNGFFEAPP PDSSAYNDNT NQTRFGSSSS SLPCSISMFD EYLFSQVTKT KLSQRF
101: VNIREFIASS NSTVEDLSTQ ARILQARISE IHGRLSYWTE PDKINNVEHL GQLEISIRQS LDQLRAHKEH FGQQQQAMQI ENANFVKDWS TCSMQDGIQI
201: PLEQQLQSMS WILNSNTTNI VTEEHNSIPQ REVECSASSS FGSYPGYFGT GKSPEMTIPG QETSFLDELN TGQLKQDTSS QQQFTNNNNI TAYNPNLHND
301: MNHHQTLPPP PLPLTLPHAQ VYIPMNQREY HMNGFFEAPP PDSSAYNDNT NQTRFGSSSS SLPCSISMFD EYLFSQVTKT KLSQRF
Arabidopsis Description
AGL30Agamous-like MADS-box protein AGL30 [Source:UniProtKB/Swiss-Prot;Acc:Q1PFA4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.