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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 4
  • mitochondrion 2
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY45183 Canola nucleus 93.11 96.82
Bra024792.1-P Field mustard nucleus 92.86 96.55
AT2G03060.2 Thale cress nucleus 77.81 79.02
CDY60833 Canola nucleus 75.0 69.34
CDY17422 Canola nucleus 74.74 59.67
CDX76715 Canola nucleus 7.65 46.88
CDY24740 Canola nucleus 7.14 43.75
CDX95922 Canola mitochondrion 39.29 42.19
GSMUA_Achr3P24170_001 Banana nucleus 36.99 40.62
GSMUA_Achr11P... Banana nucleus 22.96 39.47
CDY11489 Canola nucleus 8.93 39.33
GSMUA_Achr2P01740_001 Banana nucleus 33.42 38.42
KXG29049 Sorghum nucleus 36.48 37.73
CDY58993 Canola nucleus 35.97 37.2
CDX76718 Canola nucleus 8.67 36.96
TraesCS4B01G150200.1 Wheat nucleus 35.97 36.25
CDY26732 Canola nucleus 34.69 36.17
TraesCS4D01G147000.1 Wheat nucleus 35.71 35.99
TraesCS4A01G169000.1 Wheat nucleus 35.46 35.92
HORVU4Hr1G032440.7 Barley nucleus 35.46 35.92
CDY40939 Canola golgi, mitochondrion, plasma membrane, plastid 38.01 35.73
Os11t0658700-01 Rice nucleus 34.69 34.69
CDX96703 Canola nucleus 35.71 32.11
CDY26727 Canola extracellular 15.56 29.19
CDX76713 Canola nucleus 10.71 28.57
CDX83816 Canola nucleus 36.48 27.61
CDX87492 Canola nucleus 15.82 27.07
CDX76717 Canola nucleus 11.73 25.99
CDX88401 Canola nucleus 15.82 25.41
Zm00001d048697_P003 Maize nucleus, plasma membrane, plastid 31.38 25.05
CDY01295 Canola nucleus 19.64 24.76
CDX69305 Canola nucleus 12.5 24.14
CDY00423 Canola nucleus 20.41 23.88
CDY41491 Canola nucleus 20.41 23.67
CDX91664 Canola nucleus 19.9 23.08
CDX87489 Canola nucleus 18.88 22.49
CDX88402 Canola nucleus 18.62 22.19
CDY64870 Canola nucleus 10.46 17.23
Protein Annotations
MapMan:15.5.14Gene3D:3.40.1810.10GO:A0A078EPC8EnsemblPlants:CDY03021ProteinID:CDY03021ProteinID:CDY03021.1
GO:GO:0000982GO:GO:0000987GO:GO:0003674GO:GO:0003676GO:GO:0003677GO:GO:0003700
GO:GO:0005488GO:GO:0005515GO:GO:0006139GO:GO:0008150GO:GO:0008152GO:GO:0009058
GO:GO:0009987GO:GO:0045944GO:GO:0046983EnsemblPlantsGene:GSBRNA2T00115333001InterPro:IPR002100InterPro:IPR036879
InterPro:MADS_SRF-likePFAM:PF00319PRINTS:PR00404PFscan:PS50066PANTHER:PTHR11945PANTHER:PTHR11945:SF169
SMART:SM00432SUPFAM:SSF55455InterPro:TF_MADSboxInterPro:TF_MADSbox_sfUniParc:UPI0004EE7D02SEG:seg
Description
BnaC07g22060D
Coordinates
chrLK031939:-:411943..414629
Molecular Weight (calculated)
44383.6 Da
IEP (calculated)
7.413
GRAVY (calculated)
-0.530
Length
392 amino acids
Sequence
(BLAST)
001: MGRVKLKIKK LENTAGRQAT FAKRKNGILK KASELSVLCD IDLVLLMFSP TGKPSLCCAQ RSSIEKVIAK FSQVTPEERA KRKIEGLEVL KKTFQKLDHH
101: VNIRDFIFSS NPTTEDLSAR ARILQDRISE IHGRLRYWTE PDKINNVEDL GQLEISIRQS LDQLRAHKEH FGQQQHAMQI ENANFVKDWS TSLLQDGIQI
201: PLEQQLQSMP WILNTNTTNI VTEEHNSIPQ REVECSASSS FGSYPGYFGT GKSPEITISG QDTSFLDDLT NGHLKPQTIT QQQFTENSVI PYVPSLQNDL
301: NHHQTLPLPL PLPHPPPVFN FPMNQREYHM NGFFEAPPPG SSVYNNTANQ ARFGSNSSSL PCSISMLDEY LFSQVKHHNF CSDSRYGFLL ST
Best Arabidopsis Sequence Match ( AT2G03060.2 )
(BLAST)
001: MGRVKLKIKK LENTNGRQST FAKRKNGILK KANELSILCD IDIVLLMFSP TGKAAICCGT RSSMEEVIAK FSQVTPQERT KRKFESLENL KKTFQKLDHD
101: VNIREFIASS NSTVEDLSTQ ARILQARISE IHGRLSYWTE PDKINNVEHL GQLEISIRQS LDQLRAHKEH FGQQQQAMQI ENANFVKDWS TCSMQDGIQI
201: PLEQQLQSMS WILNSNTTNI VTEEHNSIPQ REVECSASSS FGSYPGYFGT GKSPEMTIPG QETSFLDELN TGQLKQDTSS QQQFTNNNNI TAYNPNLHND
301: MNHHQTLPPP PLPLTLPHAQ VYIPMNQREY HMNGFFEAPP PDSSAYNDNT NQTRFGSSSS SLPCSISMFD EYLFSQVTKT KLSQRF
Arabidopsis Description
AGL30Agamous-like MADS-box protein AGL30 [Source:UniProtKB/Swiss-Prot;Acc:Q1PFA4]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.