Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- nucleus 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G147000.1 | Wheat | nucleus | 98.2 | 98.2 |
| TraesCS4A01G169000.1 | Wheat | nucleus | 96.92 | 97.42 |
| HORVU4Hr1G032440.7 | Barley | nucleus | 95.89 | 96.38 |
| KXG29049 | Sorghum | nucleus | 76.86 | 78.89 |
| Os11t0658700-01 | Rice | nucleus | 79.18 | 78.57 |
| GSMUA_Achr3P24170_001 | Banana | nucleus | 56.81 | 61.9 |
| GSMUA_Achr2P01740_001 | Banana | nucleus | 53.21 | 60.7 |
| GSMUA_Achr11P... | Banana | nucleus | 33.42 | 57.02 |
| VIT_17s0000g06340.t01 | Wine grape | nucleus | 49.1 | 50.93 |
| PGSC0003DMT400050265 | Potato | nucleus | 17.74 | 48.59 |
| KRH03491 | Soybean | nucleus | 43.7 | 48.02 |
| KRH56901 | Soybean | nucleus | 40.87 | 47.04 |
| KRH50568 | Soybean | nucleus | 42.42 | 46.88 |
| Zm00001d048697_P003 | Maize | nucleus, plasma membrane, plastid | 56.04 | 44.4 |
| KRG89584 | Soybean | nucleus | 41.39 | 43.51 |
| Bra004393.1-P | Field mustard | nucleus | 36.25 | 40.4 |
| CDY58993 | Canola | nucleus | 39.33 | 40.37 |
| Bra031049.1-P | Field mustard | nucleus | 39.07 | 39.79 |
| KRH70750 | Soybean | nucleus | 22.88 | 39.38 |
| CDX95922 | Canola | mitochondrion | 36.5 | 38.9 |
| CDY26732 | Canola | nucleus | 37.53 | 38.83 |
| AT1G69540.2 | Thale cress | nucleus | 36.5 | 38.69 |
| Bra024792.1-P | Field mustard | nucleus | 36.76 | 37.93 |
| CDY45183 | Canola | nucleus | 36.5 | 37.67 |
| AT2G03060.2 | Thale cress | nucleus | 37.02 | 37.31 |
| AT1G18750.3 | Thale cress | nucleus | 39.33 | 37.05 |
| Bra025685.1-P | Field mustard | nucleus | 35.99 | 36.94 |
| Bra016544.1-P | Field mustard | nucleus | 29.05 | 36.93 |
| Bra017404.1-P | Field mustard | nucleus | 35.48 | 36.41 |
| CDY03021 | Canola | nucleus | 36.25 | 35.97 |
| KRH74891 | Soybean | endoplasmic reticulum, golgi, mitochondrion, vacuole | 35.22 | 35.58 |
| CDX96703 | Canola | nucleus | 39.59 | 35.32 |
| CDY40939 | Canola | golgi, mitochondrion, plasma membrane, plastid | 36.25 | 33.81 |
| CDY60833 | Canola | nucleus | 36.25 | 33.25 |
| CDY26727 | Canola | extracellular | 16.97 | 31.58 |
| CDX83816 | Canola | nucleus | 40.36 | 30.31 |
| Solyc03g115910.1.1 | Tomato | plastid | 31.62 | 29.5 |
| CDY17422 | Canola | nucleus | 36.76 | 29.12 |
| TraesCS4B01G023300.1 | Wheat | nucleus | 20.05 | 25.32 |
| CDY64870 | Canola | nucleus | 12.6 | 20.59 |
Protein Annotations
| EnsemblPlants:TraesCS4B01G150200.1 | EnsemblPlantsGene:TraesCS4B01G150200 | Gene3D:3.40.1810.10 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0046983 | InterPro:IPR002100 | InterPro:IPR036879 | InterPro:TF_MADSbox |
| InterPro:TF_MADSbox_sf | ncoils:Coil | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF169 | PFAM:PF00319 | PFscan:PS50066 |
| PRINTS:PR00404 | SEG:seg | SMART:SM00432 | SUPFAM:SSF55455 | MapMan:15.5.14 | : |
Description
No Description!
Coordinates
chr4B:-:230008544..230011414
Molecular Weight (calculated)
43286.2 Da
IEP (calculated)
6.610
GRAVY (calculated)
-0.603
Length
389 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRVKLKIKK LENTSGRQVT YSKRRSGILK KAKELSILCD IDLILLMFSP SGRPTICVGD KSPIDEVIAK YAQQTPQERA KRKLESLEAL KKTFKKLDHD
101: VNIQDFLGSG GQTVEELSSH LGALQCQMAD VQKRLSYWSD PEKVENIDHI RAMEQSLKES LNRIGIHKEN FAKQHLMGLQ CPAAQFQNEM QLPLGLTGDP
201: NPSSWFHNGG SSDGQPPMML PEDPSLLHQR DIGCSTSTSL QSYPGYFSMS KQSTDTAAGE QQHQQAAGVR QHQHQHQQPE FSQGDCLTSL HLGAQFPYQS
301: AFDHASLLND RLFRPDMELH VDNAAASAMD FVGGHYEMPR PGDEASFQNW ASAACGATMY DHQQQPPSAQ LIVQNITESL TVSSLQQQL
101: VNIQDFLGSG GQTVEELSSH LGALQCQMAD VQKRLSYWSD PEKVENIDHI RAMEQSLKES LNRIGIHKEN FAKQHLMGLQ CPAAQFQNEM QLPLGLTGDP
201: NPSSWFHNGG SSDGQPPMML PEDPSLLHQR DIGCSTSTSL QSYPGYFSMS KQSTDTAAGE QQHQQAAGVR QHQHQHQQPE FSQGDCLTSL HLGAQFPYQS
301: AFDHASLLND RLFRPDMELH VDNAAASAMD FVGGHYEMPR PGDEASFQNW ASAACGATMY DHQQQPPSAQ LIVQNITESL TVSSLQQQL
001: MGRVKLKIKK LENTNGRQST FAKRKNGILK KANELSILCD IDIVLLMFSP TGKAAICCGT RSSMEEVIAK FSQVTPQERT KRKFESLENL KKTFQKLDHD
101: VNIREFIASS NSTVEDLSTQ ARILQARISE IHGRLSYWTE PDKINNVEHL GQLEISIRQS LDQLRAHKEH FGQQQQAMQI ENANFVKDWS TCSMQDGIQI
201: PLEQQLQSMS WILNSNTTNI VTEEHNSIPQ REVECSASSS FGSYPGYFGT GKSPEMTIPG QETSFLDELN TGQLKQDTSS QQQFTNNNNI TAYNPNLHND
301: MNHHQTLPPP PLPLTLPHAQ VYIPMNQREY HMNGFFEAPP PDSSAYNDNT NQTRFGSSSS SLPCSISMFD EYLFSQVTKT KLSQRF
101: VNIREFIASS NSTVEDLSTQ ARILQARISE IHGRLSYWTE PDKINNVEHL GQLEISIRQS LDQLRAHKEH FGQQQQAMQI ENANFVKDWS TCSMQDGIQI
201: PLEQQLQSMS WILNSNTTNI VTEEHNSIPQ REVECSASSS FGSYPGYFGT GKSPEMTIPG QETSFLDELN TGQLKQDTSS QQQFTNNNNI TAYNPNLHND
301: MNHHQTLPPP PLPLTLPHAQ VYIPMNQREY HMNGFFEAPP PDSSAYNDNT NQTRFGSSSS SLPCSISMFD EYLFSQVTKT KLSQRF
Arabidopsis Description
AGL30Agamous-like MADS-box protein AGL30 [Source:UniProtKB/Swiss-Prot;Acc:Q1PFA4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.