CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, endoplasmic reticulum, golgi, vacuole

Predictor Summary:

plastid 1
mitochondrion 3
vacuole 1
endoplasmic reticulum 1
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH50568	Soybean	nucleus	52.73	57.67
KRG89584	Soybean	nucleus	52.21	54.32
KRH70750	Soybean	nucleus	25.71	43.81
GSMUA_Achr11P...	Banana	nucleus	23.64	39.91
KRH03491	Soybean	nucleus	35.58	38.7
GSMUA_Achr3P24170_001	Banana	nucleus	34.55	37.25
KRH56901	Soybean	nucleus	32.21	36.69
GSMUA_Achr2P01740_001	Banana	nucleus	32.21	36.36
KXG29049	Sorghum	nucleus	34.81	35.36
Bra004393.1-P	Field mustard	nucleus	31.95	35.24
TraesCS4B01G150200.1	Wheat	nucleus	35.58	35.22
TraesCS4D01G147000.1	Wheat	nucleus	35.32	34.96
HORVU4Hr1G032440.7	Barley	nucleus	34.81	34.63
TraesCS4A01G169000.1	Wheat	nucleus	34.81	34.63
CDX95922	Canola	mitochondrion	31.95	33.7
Os11t0658700-01	Rice	nucleus	34.03	33.42
AT1G69540.2	Thale cress	nucleus	31.69	33.24
CDY40939	Canola	golgi, mitochondrion, plasma membrane, plastid	31.95	29.5
Zm00001d048697_P003	Maize	nucleus, plasma membrane, plastid	28.31	22.2
KRH18859	Soybean	nucleus	15.32	17.66
KRH16660	Soybean	nucleus	15.58	17.29
KRH61376	Soybean	nucleus	13.51	16.0

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	UniProt:A0A0R0LDF2	EMBL:ACUP02000085	ncoils:Coil	EnsemblPlantsGene:GLYMA_01G050000
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
GO:GO:0046983	InterPro:IPR002100	InterPro:IPR036879	EnsemblPlants:KRH74891	ProteinID:KRH74891	ProteinID:KRH74891.1
PFAM:PF00319	PRINTS:PR00404	PFscan:PS50066	PANTHER:PTHR11945	PANTHER:PTHR11945:SF169	SMART:SM00432
SUPFAM:SSF55455	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	TMHMM:TMhelix	UniParc:UPI0006EE033E	:

Description

hypothetical protein

Coordinates

chr1:+:5869189..5875883

Molecular Weight (calculated)

43976.3 Da

IEP (calculated)

8.533

GRAVY (calculated)

-0.515

Length

385 amino acids

Sequence
(BLAST)

001: MGRVKLKIKR MENTNGLLAT YAKRKNRIMK KAAELAILCG VYIILLMFSP SGKPSLCRGK HNNFKGIITK FSQLTPQERE KSNLESLEVL KKTFKKLDHD
101: VNIQDFFGYW TDLGTSNSVE QLGQMENSLK ESLNQIRSHK ENIQKQEFAS LQCNNQFNEM HVPFRMDVQQ HLQPLSWITN GDNQNLVLSE DSNLLLHEVC
201: GSTSYSFRSY ANDHGSSTKT HISISKQENG ILSDLLQFPY LPNNFNLWND TKVQLTPEMK PNENHVDYNV NGTIEAARTE YDSNHQGWTS TSGPCVIHAL
301: MHITYKAGTA QGTSLSSHSL RLYTSLSVKA SSLINFLNNH YYFSNTEDDV NIKEAMEDLN YIPKQLFWKC IGIPKIYLGI TYSRI

Best Arabidopsis Sequence Match ( AT1G69540.1 )
(BLAST)

001: MGRVKLKIKK LQNMNGRQCT YTKRRHGIMK KAKELSILCD IDVVLLMFSP MGKASICIGK HSIGEVIAKF AQLSPQERAK RKLENLEALR KTFMKANHDI
101: DISKFLDRIS TPTVEVLSEK IRFLQTQLSD IHTRLSYWTD VDNIDSVDVL QQLEHSLRQS LAQIYGRKAS MPQRQQQQLM SSQCKNQLQT EIDIDFGMEM
201: EQQLENFSWV RTDENMNVPI EEEDPNLQLH HMYKDITCSA SSALGNYSGL FSKSSDILQK LETGSIPGTS ADPNQQFSNL SFLNDQKLKQ LAEWNLLGSP
301: ADYYVSQILE ASYKPQIGGK NNGASSETLP YVAVFDDPLY FWPN

Arabidopsis Description

AGL94AGAMOUS-like 94 [Source:TAIR;Acc:AT1G69540]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.