CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG89584	Soybean	nucleus	86.36	82.16
KRH74891	Soybean	endoplasmic reticulum, golgi, mitochondrion, vacuole	57.67	52.73
KRH70750	Soybean	nucleus	33.24	51.77
GSMUA_Achr3P24170_001	Banana	nucleus	52.27	51.54
GSMUA_Achr11P...	Banana	nucleus	32.95	50.88
GSMUA_Achr2P01740_001	Banana	nucleus	48.01	49.56
KRH03491	Soybean	nucleus	48.58	48.31
KRH56901	Soybean	nucleus	45.17	47.04
Bra004393.1-P	Field mustard	nucleus	46.02	46.42
CDX95922	Canola	mitochondrion	46.31	44.66
AT1G69540.2	Thale cress	nucleus	46.31	44.41
KXG29049	Sorghum	nucleus	47.73	44.33
TraesCS4B01G150200.1	Wheat	nucleus	46.88	42.42
HORVU4Hr1G032440.7	Barley	nucleus	46.59	42.38
TraesCS4D01G147000.1	Wheat	nucleus	46.59	42.16
TraesCS4A01G169000.1	Wheat	nucleus	46.02	41.86
Os11t0658700-01	Rice	nucleus	45.45	40.82
CDY40939	Canola	golgi, mitochondrion, plasma membrane, plastid	46.59	39.33
Zm00001d048697_P003	Maize	nucleus, plasma membrane, plastid	38.35	27.49
KRH18859	Soybean	nucleus	23.3	24.55
KRH16660	Soybean	nucleus	23.3	23.63
KRH61376	Soybean	nucleus	19.32	20.92

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	UniProt:A0A0R0JCU0	EMBL:ACUP02004706	ncoils:Coil	EnsemblPlantsGene:GLYMA_07G228900
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0046983
InterPro:IPR002100	InterPro:IPR002487	InterPro:IPR036879	EnsemblPlants:KRH50568	ProteinID:KRH50568	ProteinID:KRH50568.1
PFAM:PF00319	PRINTS:PR00404	PFscan:PS50066	PFscan:PS51297	PANTHER:PTHR11945	PANTHER:PTHR11945:SF169
SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_Kbox	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI0006EDAB9C
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr7:+:40859599..40866697

Molecular Weight (calculated)

40156.4 Da

IEP (calculated)

7.362

GRAVY (calculated)

-0.746

Length

352 amino acids

Sequence
(BLAST)

001: MGRVKLKIKR LENTNGRQAT YAKRKNGIMK KAAEISILCD IDIILLMFAP NGKPSLCRGR HSNFEEVIAK FGQLTPQERA KRKLETLEAL KKTFKKLDHD
101: VNVQEFMGTS SQTIEDLSNQ ARLLQTQISE THKRLSHWTE FDKISNVDQL GQMENSLRES LNQIRTRKEN IKKQQQLMSL QCNNQFNEMN IPFRMSVEQQ
201: LQPLSWIAND DNHNIVLPED SNMFLHKDVE GSTSSSFGSH VSYLGSSIKN DMSNSAQENG VLSDMSNTAP MRLQLNGHFP YLPYNFNLPN NLKFQPTAEI
301: NPYENPVDYH VNGGFEAPRS GYDSNNHHDW ASTSGPCGVT MFDEQLYAQQ PN

Best Arabidopsis Sequence Match ( AT2G03060.3 )
(BLAST)

001: MGRVKLKIKK LENTNGRQST FAKRKNGILK KANELSILCD IDIVLLMFSP TGKAAICCGT RSSMEEVIAK FSQVTPQERT KRKFESLENL KKTFQKLDHD
101: VNIREFIASS NSTVEDLSTQ ARILQARISE IHGRLSYWTE PDKINNVEHL GQLEISIRQS LDQLRAHKEH FGQQQQAMQI ENANFVKDWS TCSMQDGIQI
201: PLEQQLQSMS WILNSNTTNI VTEEHNSIPQ REVECSASSS FGSYPGYFGT GKSPEMTIPG QETSFLDELN TGQLKQDTSS QQQFTNNNNI TAYNPNLHND
301: MNHHQTLPPP PLPLTLPHAQ VYIPMNQREY HMNGFFEAPP PDSSAYNDNT NQTRFGSSSS SLPCSISMFD EYLFSQMQQP N

Arabidopsis Description

AGL30Agamous-like MADS-box protein AGL30 [Source:UniProtKB/Swiss-Prot;Acc:Q1PFA4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.