Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- nucleus 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4A01G169000.1 | Wheat | nucleus | 98.46 | 98.97 |
| TraesCS4B01G150200.1 | Wheat | nucleus | 98.2 | 98.2 |
| HORVU4Hr1G032440.7 | Barley | nucleus | 96.92 | 97.42 |
| KXG29049 | Sorghum | nucleus | 77.38 | 79.42 |
| Os11t0658700-01 | Rice | nucleus | 79.95 | 79.34 |
| GSMUA_Achr3P24170_001 | Banana | nucleus | 56.56 | 61.62 |
| GSMUA_Achr2P01740_001 | Banana | nucleus | 52.96 | 60.41 |
| GSMUA_Achr11P... | Banana | nucleus | 33.42 | 57.02 |
| VIT_17s0000g06340.t01 | Wine grape | nucleus | 48.84 | 50.67 |
| PGSC0003DMT400050265 | Potato | nucleus | 17.74 | 48.59 |
| KRH03491 | Soybean | nucleus | 43.44 | 47.74 |
| KRH56901 | Soybean | nucleus | 40.62 | 46.75 |
| KRH50568 | Soybean | nucleus | 42.16 | 46.59 |
| Zm00001d048697_P003 | Maize | nucleus, plasma membrane, plastid | 56.3 | 44.6 |
| KRG89584 | Soybean | nucleus | 41.13 | 43.24 |
| Bra004393.1-P | Field mustard | nucleus | 36.25 | 40.4 |
| CDY58993 | Canola | nucleus | 39.33 | 40.37 |
| Bra031049.1-P | Field mustard | nucleus | 39.07 | 39.79 |
| KRH70750 | Soybean | nucleus | 22.88 | 39.38 |
| CDX95922 | Canola | mitochondrion | 36.5 | 38.9 |
| CDY26732 | Canola | nucleus | 37.53 | 38.83 |
| AT1G69540.2 | Thale cress | nucleus | 36.5 | 38.69 |
| Bra024792.1-P | Field mustard | nucleus | 36.5 | 37.67 |
| CDY45183 | Canola | nucleus | 36.25 | 37.4 |
| AT1G18750.3 | Thale cress | nucleus | 39.59 | 37.29 |
| AT2G03060.2 | Thale cress | nucleus | 36.76 | 37.05 |
| Bra025685.1-P | Field mustard | nucleus | 35.99 | 36.94 |
| Bra016544.1-P | Field mustard | nucleus | 28.79 | 36.6 |
| Bra017404.1-P | Field mustard | nucleus | 35.22 | 36.15 |
| CDY03021 | Canola | nucleus | 35.99 | 35.71 |
| KRH74891 | Soybean | endoplasmic reticulum, golgi, mitochondrion, vacuole | 34.96 | 35.32 |
| CDX96703 | Canola | nucleus | 39.33 | 35.09 |
| CDY40939 | Canola | golgi, mitochondrion, plasma membrane, plastid | 36.25 | 33.81 |
| CDY60833 | Canola | nucleus | 35.99 | 33.02 |
| CDY26727 | Canola | extracellular | 16.97 | 31.58 |
| CDX83816 | Canola | nucleus | 40.1 | 30.12 |
| Solyc03g115910.1.1 | Tomato | plastid | 31.62 | 29.5 |
| CDY17422 | Canola | nucleus | 36.5 | 28.92 |
| TraesCS4D01G021100.1 | Wheat | nucleus | 21.59 | 23.8 |
| CDY64870 | Canola | nucleus | 12.6 | 20.59 |
Protein Annotations
| EnsemblPlants:TraesCS4D01G147000.1 | EnsemblPlantsGene:TraesCS4D01G147000 | Gene3D:3.40.1810.10 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0046983 | InterPro:IPR002100 | InterPro:IPR036879 | InterPro:TF_MADSbox |
| InterPro:TF_MADSbox_sf | ncoils:Coil | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF169 | PFAM:PF00319 | PFscan:PS50066 |
| PRINTS:PR00404 | SEG:seg | SMART:SM00432 | SUPFAM:SSF55455 | MapMan:15.5.14 | : |
Description
No Description!
Coordinates
chr4D:-:137764939..137767808
Molecular Weight (calculated)
43202.1 Da
IEP (calculated)
6.555
GRAVY (calculated)
-0.590
Length
389 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRVKLKIKK LENTSGRQVT YSKRRSGILK KAKELSILCD IDLILLMFSP SGRPTICVGD KSPIDEVIAK YAQQTPQERA KRKLESLEAL KKTFKKLDHD
101: VNIQDFLGSG GQTVEELSSH LGALQCQMAD VQKRLSYWSD PEKVENIDHI RAMEQSLKES LNRIGIHKEN FAKQHLMGLQ CAAAQFQNEM QLPLGLTGDP
201: NPSSWFHSGG GSDGQPPMML PEDPSLLHQR DIGCSTSTSL QSYPGYFSMS KQSTDTAGGE QQHQQAAAVH QHQHQHQQPE FSQGDCLTSL HLGAQFPYQS
301: AFDHASLLND RLFRPDMELH VDNAAASAMD FVGGHYEMPR PGDEASFQNW ASAACGATMY DHQQQPPSAQ LIVQNMTESL TVSSLQQQL
101: VNIQDFLGSG GQTVEELSSH LGALQCQMAD VQKRLSYWSD PEKVENIDHI RAMEQSLKES LNRIGIHKEN FAKQHLMGLQ CAAAQFQNEM QLPLGLTGDP
201: NPSSWFHSGG GSDGQPPMML PEDPSLLHQR DIGCSTSTSL QSYPGYFSMS KQSTDTAGGE QQHQQAAAVH QHQHQHQQPE FSQGDCLTSL HLGAQFPYQS
301: AFDHASLLND RLFRPDMELH VDNAAASAMD FVGGHYEMPR PGDEASFQNW ASAACGATMY DHQQQPPSAQ LIVQNMTESL TVSSLQQQL
001: MGRVKLKIKR LESTSNRQVT YTKRKNGILK KAKELSILCD IDIVLLMFSP TGRATAFHGE HSCIEEVISK FAQLTPQERT KRKLESLEAL KKTFKKLDHD
101: VNIHDFLGAR NQTIEGLSNQ VAIYQAQLME CHRRLSCWTN IDRIENTEHL DLLEESLRKS IERIQIHKEH YRKNQLLPIE CATTQFHSGI QLPMAMGGNS
201: SMQEAHSMSW LPDNDHQQTI LPGDSSFLPH REMDGSIPVY SSCFFESTKP EDQICSNPGQ QFEQLEQQGN GCLGLQQLGE EYSYPTPFGT TLGMEEDQEK
301: KIKSEMELNN LQQQQQQQQQ QQQQDPSMYD PMANNNGGCF QIPHDQSMFV NDHHHHHHHH HQNWVPDSMF GQTSYNQQPN
101: VNIHDFLGAR NQTIEGLSNQ VAIYQAQLME CHRRLSCWTN IDRIENTEHL DLLEESLRKS IERIQIHKEH YRKNQLLPIE CATTQFHSGI QLPMAMGGNS
201: SMQEAHSMSW LPDNDHQQTI LPGDSSFLPH REMDGSIPVY SSCFFESTKP EDQICSNPGQ QFEQLEQQGN GCLGLQQLGE EYSYPTPFGT TLGMEEDQEK
301: KIKSEMELNN LQQQQQQQQQ QQQQDPSMYD PMANNNGGCF QIPHDQSMFV NDHHHHHHHH HQNWVPDSMF GQTSYNQQPN
Arabidopsis Description
AGL65AGAMOUS-like 65 [Source:TAIR;Acc:AT1G18750]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.