Factsheet for Bra016544.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra031049.1-P	Field mustard	nucleus	86.27	69.11
CDX96703	Canola	nucleus	97.71	68.58
Bra025685.1-P	Field mustard	nucleus	79.41	64.12
AT1G18750.3	Thale cress	nucleus	85.95	63.68
CDX83816	Canola	nucleus	94.12	55.6
PGSC0003DMT400050265	Potato	nucleus	23.2	50.0
VIT_17s0000g06340.t01	Wine grape	nucleus	48.04	39.2
GSMUA_Achr11P...	Banana	nucleus	27.45	36.84
KRH56901	Soybean	nucleus	40.2	36.39
KRH03491	Soybean	nucleus	41.5	35.88
GSMUA_Achr3P24170_001	Banana	nucleus	37.91	32.49
KXG29049	Sorghum	nucleus	40.2	32.45
GSMUA_Achr2P01740_001	Banana	nucleus	35.95	32.26
TraesCS4B01G150200.1	Wheat	nucleus	36.93	29.05
Bra024792.1-P	Field mustard	nucleus	35.62	28.91
TraesCS4D01G147000.1	Wheat	nucleus	36.6	28.79
Bra017404.1-P	Field mustard	nucleus	35.62	28.76
HORVU4Hr1G032440.7	Barley	nucleus	36.27	28.68
Os11t0658700-01	Rice	nucleus	36.6	28.57
TraesCS4A01G169000.1	Wheat	nucleus	35.95	28.42
Bra004393.1-P	Field mustard	nucleus	31.37	27.51
Bra015645.1-P	Field mustard	nucleus	16.67	24.4
Solyc03g115910.1.1	Tomato	plastid	31.05	22.78
Zm00001d048697_P003	Maize	nucleus, plasma membrane, plastid	36.27	22.61
Bra016386.1-P	Field mustard	nucleus	22.55	22.19
Bra011763.1-P	Field mustard	mitochondrion	12.09	21.14
Bra012308.1-P	Field mustard	nucleus	22.88	20.9
Bra015643.1-P	Field mustard	nucleus	20.59	19.15

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	EnsemblPlantsGene:Bra016544	EnsemblPlants:Bra016544.1	EnsemblPlants:Bra016544.1-P	ncoils:Coil
GO:GO:0000982	GO:GO:0000987	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0045944	GO:GO:0046983	InterPro:IPR002100	InterPro:IPR036879	UniProt:M4DJ66
InterPro:MADS_SRF-like	PFAM:PF00319	PRINTS:PR00404	PFscan:PS50066	PANTHER:PTHR11945	PANTHER:PTHR11945:SF156
SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI0002546F3E	SEG:seg

Description

AT1G18750 (E=4e-061) AGL65 | AGL65 (AGAMOUS-LIKE 65); DNA binding / transcription factor

Coordinates

chrA08:-:18952885..18955007

Molecular Weight (calculated)

35118.2 Da

IEP (calculated)

6.297

GRAVY (calculated)

-0.879

Length

306 amino acids

Sequence
(BLAST)

001: MGRVKLKIKR LESTGNRQVT YSKRKSGILK KAKELSILCD IDIVLLMFSP TGKPTVFHGE HSCIEEVISK FAQLTPQERT KSCWTNIDRI ENTEHLNLLE
101: ESLRKSIERI QFHKFHSGIQ LPLAMEGNNS MQEAHSMSWL PNNDNQETIL PGESSFLPHR EMDGLNPVYS NGFFESVKQE DQMCSNQGQQ FEQLEQQQGH
201: GCLGLQQIGE EFSYPTPFGT TLGMDEDQEK KIKSEMELNN LQQKQQQQDP SSMYAPTANN GGCFQNPHDQ SMFSTDHHHH YQHYQHHQNW VPGPVFGQAS
301: YNQQPN

Best Arabidopsis Sequence Match ( AT1G18750.3 )
(BLAST)

001: MGRVKLKIKR LESTSNRQVT YTKRKNGILK KAKELSILCD IDIVLLMFSP TGRATAFHGE HSCIEEVISK FAQLTPQERT KRKLESLEAL KKTFKKLDHD
101: VNIHDFLGAR NQTIEVWIDH LRFMNFLGYF LISLSQIAKV CVNITTRQGL SNQVAIYQAQ LMECHRRLSC WTNIDRIENT EHLDLLEESL RKSIERIQIH
201: KEHYRKNQLL PIECATTQFH SGIQLPMAMG GNSSMQEAHS MSWLPDNDHQ QTILPGDSSF LPHREMDGSI PVYSSCFFES TKPEDQICSN PGQQFEQLEQ
301: QGNGCLGLQQ LGEEYSYPTP FGTTLGMEED QEKKIKSEME LNNLQQQQQQ QQQQQQQDPS MYDPMANNNG GCFQIPHDQS MFVNDHHHHH HHHHQNWVPD
401: SMFGQTSYNQ QPN

Arabidopsis Description

AGL65AGAMOUS-like 65 [Source:TAIR;Acc:AT1G18750]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.