CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 2
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	peroxisome
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra016544.1-P	Field mustard	nucleus	55.6	94.12
CDY58993	Canola	nucleus	63.51	86.81
CDX96703	Canola	nucleus	71.43	84.86
CDY26732	Canola	nucleus	59.27	81.65
AT1G18750.3	Thale cress	nucleus	63.32	79.42
CDY26727	Canola	extracellular	25.29	62.68
CDY64870	Canola	nucleus	28.57	62.18
VIT_17s0000g06340.t01	Wine grape	nucleus	38.22	52.8
GSMUA_Achr11P...	Banana	nucleus	22.2	50.44
PGSC0003DMT400050265	Potato	nucleus	13.71	50.0
CDY24740	Canola	nucleus	6.18	50.0
CDX76715	Canola	nucleus	5.98	48.44
GSMUA_Achr2P01740_001	Banana	nucleus	29.34	44.57
GSMUA_Achr3P24170_001	Banana	nucleus	30.5	44.26
KXG29049	Sorghum	nucleus	32.05	43.8
TraesCS4B01G150200.1	Wheat	nucleus	30.31	40.36
TraesCS4D01G147000.1	Wheat	nucleus	30.12	40.1
HORVU4Hr1G032440.7	Barley	nucleus	29.92	40.05
TraesCS4A01G169000.1	Wheat	nucleus	29.73	39.79
Os11t0658700-01	Rice	nucleus	29.73	39.29
CDX76718	Canola	nucleus	6.95	39.13
CDY11489	Canola	nucleus	6.56	38.2
CDY45183	Canola	nucleus	27.22	37.4
CDX95922	Canola	mitochondrion	25.87	36.71
CDY03021	Canola	nucleus	27.61	36.48
CDY60833	Canola	nucleus	27.8	33.96
CDY40939	Canola	golgi, mitochondrion, plasma membrane, plastid	25.48	31.65
Solyc03g115910.1.1	Tomato	plastid	24.13	29.98
CDX76713	Canola	nucleus	8.49	29.93
CDY17422	Canola	nucleus	28.19	29.74
CDX87492	Canola	nucleus	12.74	28.82
CDX88401	Canola	nucleus	12.74	27.05
Zm00001d048697_P003	Maize	nucleus, plasma membrane, plastid	25.48	26.88
CDX76717	Canola	nucleus	9.07	26.55
CDY01295	Canola	nucleus	15.83	26.37
CDY41491	Canola	nucleus	16.41	25.15
CDY00423	Canola	nucleus	16.02	24.78
CDX91664	Canola	nucleus	16.02	24.56
CDX88402	Canola	nucleus	15.25	24.01
CDX87489	Canola	nucleus	15.06	23.71
CDX69305	Canola	nucleus	8.69	22.17

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	GO:A0A078D352	EnsemblPlants:CDX83816	ProteinID:CDX83816	ProteinID:CDX83816.1
ncoils:Coil	GO:GO:0000982	GO:GO:0000987	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0045944	GO:GO:0046983	EnsemblPlantsGene:GSBRNA2T00139571001	InterPro:IPR002100
InterPro:IPR036879	InterPro:MADS_SRF-like	PFAM:PF00319	PRINTS:PR00404	PFscan:PS50066	PANTHER:PTHR11945
PANTHER:PTHR11945:SF156	SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI0004EDBC85
SEG:seg	:	:	:	:	:

Description

BnaC08g18290D

Coordinates

chrLK031834:-:602463..607483

Molecular Weight (calculated)

59175.5 Da

IEP (calculated)

6.977

GRAVY (calculated)

-0.848

Length

518 amino acids

Sequence
(BLAST)

001: MGRVKLKIKR LESTGNRQVT YSKRKSGILK KAKELSILCD IDIVLLMFSP TGKPTVFHGE HSCIEEVISK FAQLTPQERT KRKLESLEAL KKTFKKLDHD
101: VNIHEFLGAR NQTIEVAYRP SLGLSNQVAI SQAQLMECHR RLSCWTNIDR IENTEHLNLL EESLRKSIER IQFHKEHYTK NQLLPLDCTT TQFHSGIQLP
201: LAMEGNKSMQ EAHSMSWLPN NDNQETILPG ESSFLPHREM DGVNPIYSNG FFEPVKQEDQ MCSNQGQQFE QLEQQGHGCL GLQQIGEEFS YRSSFGTTLG
301: MDEDQEKKIK SEMELNNLQQ QQQQQQQDPS SMYNPTANNG GCFQNPHDQS MFGTDHHHYH YQHHQNWVPG SMFGQASYNQ VCVVCDVPRF VVQSIGADQS
401: IGADQHGYQD VLNNFTEIRS SDRTDQTDRA VPRASRLELR LEPRPDNRTD RAGARLPRPT RHSKSHGRAR LSLGHEEIED VHAFSSGGPS GQSRKHSYLY
501: PVHPSGSDEH EHYLKGHL

Best Arabidopsis Sequence Match ( AT1G18750.1 )
(BLAST)

001: MGRVKLKIKR LESTSNRQVT YTKRKNGILK KAKELSILCD IDIVLLMFSP TGRATAFHGE HSCIEEVISK FAQLTPQERT KRKLESLEAL KKTFKKLDHD
101: VNIHDFLGAR NQTIEGLSNQ VAIYQAQLME CHRRLSCWTN IDRIENTEHL DLLEESLRKS IERIQIHKEH YRKNQLLPIE CATTQFHSGI QLPMAMGGNS
201: SMQEAHSMSW LPDNDHQQTI LPGDSSFLPH REMDGSIPVY SSCFFESTKP EDQICSNPGQ QFEQLEQQGN GCLGLQQLGE EYSYPTPFGT TLGMEEDQEK
301: KIKSEMELNN LQQQQQQQQQ QQQQDPSMYD PMANNNGGCF QIPHDQSMFV NDHHHHHHHH HQNWVPDSMF GQTSYNQVCV FTPPLELSR

Arabidopsis Description

AGL65AGAMOUS-like 65 [Source:TAIR;Acc:AT1G18750]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.