Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX76715 | Canola | nucleus | 33.33 | 92.19 |
| CDY24740 | Canola | nucleus | 33.33 | 92.19 |
| CDY11489 | Canola | nucleus | 45.76 | 91.01 |
| CDX76713 | Canola | nucleus | 75.14 | 90.48 |
| CDX76718 | Canola | nucleus | 44.07 | 84.78 |
| AT2G26320.1 | Thale cress | nucleus | 31.07 | 50.46 |
| VIT_04s0008g01980.t01 | Wine grape | mitochondrion | 29.94 | 34.42 |
| CDX87492 | Canola | nucleus | 30.51 | 23.58 |
| CDX88401 | Canola | nucleus | 29.94 | 21.72 |
| CDX69305 | Canola | nucleus | 20.9 | 18.23 |
| CDY01295 | Canola | nucleus | 27.12 | 15.43 |
| CDX88402 | Canola | nucleus | 28.25 | 15.2 |
| CDX87489 | Canola | nucleus | 28.25 | 15.2 |
| CDY00423 | Canola | nucleus | 28.25 | 14.93 |
| CDX91664 | Canola | nucleus | 27.68 | 14.5 |
| CDY41491 | Canola | nucleus | 27.68 | 14.5 |
| CDY26732 | Canola | nucleus | 27.12 | 12.77 |
| CDY45183 | Canola | nucleus | 26.55 | 12.47 |
| CDY58993 | Canola | nucleus | 25.99 | 12.14 |
| CDX95922 | Canola | mitochondrion | 24.29 | 11.78 |
| CDY03021 | Canola | nucleus | 25.99 | 11.73 |
| CDX96703 | Canola | nucleus | 25.99 | 10.55 |
| CDY40939 | Canola | golgi, mitochondrion, plasma membrane, plastid | 24.29 | 10.31 |
| CDY60833 | Canola | nucleus | 23.73 | 9.91 |
| CDX83816 | Canola | nucleus | 26.55 | 9.07 |
| CDY17422 | Canola | nucleus | 24.29 | 8.76 |
| CDY26727 | Canola | extracellular | 6.78 | 5.74 |
| CDY64870 | Canola | nucleus | 4.52 | 3.36 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | GO:A0A078CIY1 | EnsemblPlants:CDX76717 | ProteinID:CDX76717 | ProteinID:CDX76717.1 |
| GO:GO:0000982 | GO:GO:0000987 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0045944 | GO:GO:0046983 | EnsemblPlantsGene:GSBRNA2T00127201001 | InterPro:IPR002100 | InterPro:IPR036879 |
| InterPro:MADS_SRF-like | PFAM:PF00319 | PRINTS:PR00404 | PFscan:PS50066 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF169 |
| SMART:SM00432 | SUPFAM:SSF55455 | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | UniParc:UPI0004EE61FD | SEG:seg |
Description
BnaC08g33030D
Coordinates
chrLK031808:-:682439..684540
Molecular Weight (calculated)
20522.8 Da
IEP (calculated)
8.671
GRAVY (calculated)
-0.729
Length
177 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRKKIDLKT IECPKERSSK YSKRKKGLLK KAEEMAVLCD SDIILLVFSP TSKPNLFYPH SRPLSRILEK LSNMSEYELE ERRAYTKKTL VKLLKNKNVE
101: IPNENHNHSS GRDEVQLQED DKVIELGEAR ELLDDNTSIL RNWQDPHRVD DLAKLTIMED HLVSILSLIK KAQIEQG
101: IPNENHNHSS GRDEVQLQED DKVIELGEAR ELLDDNTSIL RNWQDPHRVD DLAKLTIMED HLVSILSLIK KAQIEQG
001: MKRTIKNKNK QIVKENMGRK KLKLKRIESL KERSSKFSKR KKGLFKKAEE VALLCDSDIM LIVVSPTEKP TVFNTRSRSF HTILERFCML SLQEREERCD
101: LSYFYIIIT
101: LSYFYIIIT
Arabidopsis Description
AGL33AGAMOUS-like 33 [Source:UniProtKB/TrEMBL;Acc:O64840]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.