Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra025685.1-P | Field mustard | nucleus | 98.4 | 97.63 |
| CDY58993 | Canola | nucleus | 83.24 | 82.59 |
| AT1G18750.3 | Thale cress | nucleus | 81.38 | 74.09 |
| CDX96703 | Canola | nucleus | 82.45 | 71.1 |
| CDY64870 | Canola | nucleus | 42.82 | 67.65 |
| CDY26727 | Canola | extracellular | 35.9 | 64.59 |
| CDX83816 | Canola | nucleus | 81.65 | 59.27 |
| PGSC0003DMT400050265 | Potato | nucleus | 19.15 | 50.7 |
| CDY24740 | Canola | nucleus | 8.51 | 50.0 |
| VIT_17s0000g06340.t01 | Wine grape | nucleus | 49.73 | 49.87 |
| GSMUA_Achr11P... | Banana | nucleus | 30.05 | 49.56 |
| CDX76715 | Canola | nucleus | 8.24 | 48.44 |
| GSMUA_Achr3P24170_001 | Banana | nucleus | 41.49 | 43.7 |
| GSMUA_Achr2P01740_001 | Banana | nucleus | 38.83 | 42.82 |
| KXG29049 | Sorghum | nucleus | 41.49 | 41.16 |
| CDX76718 | Canola | nucleus | 9.57 | 39.13 |
| CDY11489 | Canola | nucleus | 9.04 | 38.2 |
| TraesCS4B01G150200.1 | Wheat | nucleus | 38.83 | 37.53 |
| TraesCS4D01G147000.1 | Wheat | nucleus | 38.83 | 37.53 |
| Os11t0658700-01 | Rice | nucleus | 38.83 | 37.24 |
| TraesCS4A01G169000.1 | Wheat | nucleus | 38.3 | 37.21 |
| HORVU4Hr1G032440.7 | Barley | nucleus | 38.3 | 37.21 |
| CDX95922 | Canola | mitochondrion | 35.11 | 36.16 |
| CDY45183 | Canola | nucleus | 36.17 | 36.07 |
| CDY03021 | Canola | nucleus | 36.17 | 34.69 |
| CDY60833 | Canola | nucleus | 38.03 | 33.73 |
| CDY40939 | Canola | golgi, mitochondrion, plasma membrane, plastid | 34.57 | 31.18 |
| CDX76713 | Canola | nucleus | 11.97 | 30.61 |
| CDY17422 | Canola | nucleus | 38.03 | 29.12 |
| Solyc03g115910.1.1 | Tomato | plastid | 32.18 | 29.02 |
| CDX87492 | Canola | nucleus | 17.55 | 28.82 |
| CDX76717 | Canola | nucleus | 12.77 | 27.12 |
| CDX88401 | Canola | nucleus | 17.02 | 26.23 |
| CDY01295 | Canola | nucleus | 21.28 | 25.72 |
| Zm00001d048697_P003 | Maize | nucleus, plasma membrane, plastid | 32.71 | 25.05 |
| CDY41491 | Canola | nucleus | 22.34 | 24.85 |
| CDX91664 | Canola | nucleus | 21.81 | 24.26 |
| CDY00423 | Canola | nucleus | 21.54 | 24.18 |
| CDX88402 | Canola | nucleus | 20.74 | 23.71 |
| CDX87489 | Canola | nucleus | 20.48 | 23.4 |
| CDX69305 | Canola | nucleus | 11.44 | 21.18 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | GO:A0A078GNG1 | UniProt:A0A078GNG1 | EnsemblPlants:CDY26732 | ProteinID:CDY26732 |
| ProteinID:CDY26732.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0046983 | EnsemblPlantsGene:GSBRNA2T00035638001 | InterPro:IPR002100 | InterPro:IPR036879 | PFAM:PF00319 | PRINTS:PR00404 |
| PFscan:PS50066 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF156 | SMART:SM00432 | SUPFAM:SSF55455 | InterPro:TF_MADSbox |
| InterPro:TF_MADSbox_sf | UniParc:UPI0004EEF2FB | SEG:seg | : | : | : |
Description
BnaA06g12900DBnaA06g12900D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GNG1]
Coordinates
chrLK032193:-:370155..372557
Molecular Weight (calculated)
42881.2 Da
IEP (calculated)
6.112
GRAVY (calculated)
-0.523
Length
376 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRVKLEIKR LESTGNRQVT YSKRKCGILK KAKELSILCD IDILLLMFSP TGKPTMLHGQ HSCIEEVISK FAQLTPQERT KRKLESLEAL KKTFKKLDHD
101: INIPEFLGAR NQTIESLSNQ VAIFQAQLME CHRRLSCWTN IDRIENTEHL TLLEESLRKS IERIQFHKEH HGKNQLLPIE CTTTQFHSGI LPLAMGDNNS
201: MQEAHSMSWL PDKDNQQTIL PGDSSFIPHR EMDGSIPVYT NCFFESVKQE DQKCINPGQQ FELLGQQGNG FLGLQQIGEE YSYPTPFGTT LGMEEDQENE
301: IKTEMAFKNL QQQQDPSSMF DPTASSSSCF QIPLDQPMFA TDLHHHQNWV SGSMFGQTSY NQVCVSHLTL EISMAI
101: INIPEFLGAR NQTIESLSNQ VAIFQAQLME CHRRLSCWTN IDRIENTEHL TLLEESLRKS IERIQFHKEH HGKNQLLPIE CTTTQFHSGI LPLAMGDNNS
201: MQEAHSMSWL PDKDNQQTIL PGDSSFIPHR EMDGSIPVYT NCFFESVKQE DQKCINPGQQ FELLGQQGNG FLGLQQIGEE YSYPTPFGTT LGMEEDQENE
301: IKTEMAFKNL QQQQDPSSMF DPTASSSSCF QIPLDQPMFA TDLHHHQNWV SGSMFGQTSY NQVCVSHLTL EISMAI
001: MGRVKLKIKR LESTSNRQVT YTKRKNGILK KAKELSILCD IDIVLLMFSP TGRATAFHGE HSCIEEVISK FAQLTPQERT KRKLESLEAL KKTFKKLDHD
101: VNIHDFLGAR NQTIEGLSNQ VAIYQAQLME CHRRLSCWTN IDRIENTEHL DLLEESLRKS IERIQIHKEH YRKNQLLPIE CATTQFHSGI QLPMAMGGNS
201: SMQEAHSMSW LPDNDHQQTI LPGDSSFLPH REMDGSIPVY SSCFFESTKP EDQICSNPGQ QFEQLEQQGN GCLGLQQLGE EYSYPTPFGT TLGMEEDQEK
301: KIKSEMELNN LQQQQQQQQQ QQQQDPSMYD PMANNNGGCF QIPHDQSMFV NDHHHHHHHH HQNWVPDSMF GQTSYNQVCV FTPPLELSR
101: VNIHDFLGAR NQTIEGLSNQ VAIYQAQLME CHRRLSCWTN IDRIENTEHL DLLEESLRKS IERIQIHKEH YRKNQLLPIE CATTQFHSGI QLPMAMGGNS
201: SMQEAHSMSW LPDNDHQQTI LPGDSSFLPH REMDGSIPVY SSCFFESTKP EDQICSNPGQ QFEQLEQQGN GCLGLQQLGE EYSYPTPFGT TLGMEEDQEK
301: KIKSEMELNN LQQQQQQQQQ QQQQDPSMYD PMANNNGGCF QIPHDQSMFV NDHHHHHHHH HQNWVPDSMF GQTSYNQVCV FTPPLELSR
Arabidopsis Description
AGL65AGAMOUS-like 65 [Source:TAIR;Acc:AT1G18750]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.