Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plasma membrane, golgi, plastid
Predictor Summary:
Predictor Summary:
- plastid 3
- mitochondrion 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 2
- golgi 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra004393.1-P | Field mustard | nucleus | 79.38 | 94.84 |
| CDX95922 | Canola | mitochondrion | 82.25 | 93.97 |
| AT1G69540.2 | Thale cress | nucleus | 59.23 | 67.3 |
| KRH50568 | Soybean | nucleus | 39.33 | 46.59 |
| GSMUA_Achr11P... | Banana | nucleus | 24.22 | 44.3 |
| KRG89584 | Soybean | nucleus | 38.13 | 42.97 |
| CDY24740 | Canola | nucleus | 6.47 | 42.19 |
| CDX76715 | Canola | nucleus | 6.24 | 40.62 |
| CDY45183 | Canola | nucleus | 35.97 | 39.79 |
| GSMUA_Achr2P01740_001 | Banana | nucleus | 32.13 | 39.3 |
| GSMUA_Achr3P24170_001 | Banana | nucleus | 32.61 | 38.1 |
| CDY03021 | Canola | nucleus | 35.73 | 38.01 |
| CDY60833 | Canola | nucleus | 37.41 | 36.79 |
| KXG29049 | Sorghum | nucleus | 33.33 | 36.68 |
| TraesCS4A01G169000.1 | Wheat | nucleus | 33.81 | 36.43 |
| HORVU4Hr1G032440.7 | Barley | nucleus | 33.81 | 36.43 |
| TraesCS4D01G147000.1 | Wheat | nucleus | 33.81 | 36.25 |
| TraesCS4B01G150200.1 | Wheat | nucleus | 33.81 | 36.25 |
| CDY11489 | Canola | nucleus | 7.67 | 35.96 |
| CDY58993 | Canola | nucleus | 32.61 | 35.88 |
| Os11t0658700-01 | Rice | nucleus | 33.33 | 35.46 |
| KRH70750 | Soybean | nucleus | 18.94 | 34.96 |
| CDX76718 | Canola | nucleus | 7.67 | 34.78 |
| CDY26732 | Canola | nucleus | 31.18 | 34.57 |
| CDY17422 | Canola | nucleus | 38.85 | 32.99 |
| KRH74891 | Soybean | endoplasmic reticulum, golgi, mitochondrion, vacuole | 29.5 | 31.95 |
| CDX96703 | Canola | nucleus | 31.41 | 30.05 |
| CDX87492 | Canola | nucleus | 14.63 | 26.64 |
| CDX76713 | Canola | nucleus | 9.35 | 26.53 |
| CDY26727 | Canola | extracellular | 12.95 | 25.84 |
| CDX83816 | Canola | nucleus | 31.65 | 25.48 |
| CDX88401 | Canola | nucleus | 14.39 | 24.59 |
| CDX76717 | Canola | nucleus | 10.31 | 24.29 |
| Zm00001d048697_P003 | Maize | nucleus, plasma membrane, plastid | 26.86 | 22.81 |
| CDY01295 | Canola | nucleus | 16.79 | 22.51 |
| CDX69305 | Canola | nucleus | 10.79 | 22.17 |
| CDX88402 | Canola | nucleus | 16.79 | 21.28 |
| CDX87489 | Canola | nucleus | 16.55 | 20.97 |
| CDY41491 | Canola | nucleus | 16.55 | 20.41 |
| CDY00423 | Canola | nucleus | 16.31 | 20.3 |
| CDX91664 | Canola | nucleus | 16.31 | 20.12 |
| CDY64870 | Canola | nucleus | 8.39 | 14.71 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | GO:A0A078HU97 | UniProt:A0A078HU97 | EnsemblPlants:CDY40939 | ProteinID:CDY40939 |
| ProteinID:CDY40939.1 | ncoils:Coil | GO:GO:0000982 | GO:GO:0000987 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0045944 |
| GO:GO:0046983 | EnsemblPlantsGene:GSBRNA2T00071997001 | InterPro:IPR002100 | InterPro:IPR036879 | InterPro:MADS_SRF-like | PFAM:PF00319 |
| PRINTS:PR00404 | PFscan:PS50066 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF169 | SMART:SM00432 | SUPFAM:SSF55455 |
| InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | TMHMM:TMhelix | UniParc:UPI0004EF1AE5 | SEG:seg | : |
Description
BnaC06g30770DBnaC06g30770D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HU97]
Coordinates
chrLK032484:-:265178..267740
Molecular Weight (calculated)
47924.7 Da
IEP (calculated)
7.236
GRAVY (calculated)
-0.312
Length
417 amino acids
Sequence
(BLAST)
(BLAST)
001: MRRSIPQFPI FKLSIQTLIS DFGGHTCRLN RKPISSLSFT ILLPLLSFIF FLPHKETVFP FSLGIRFFLF LFLLCRMGRV KLKIKKLDSI NARQATYCKR
101: KNGIMKKAKE LSILCDIDVV LLMFSPAGKP SLCTGEHSIG EVIAKFSQLA PQERAKRKLD NLEALKKTFM KLDHDVNISE FLERSKPTVE VVSEQVKFLQ
201: KHLSEIHTRL SYWTEVEKVD SIDDLQQLEN SIRQSLYQIR VHKENVLQHQ QQQVMSIECK NELQSDIDLD FGIDIEQQLE NFSWVRTDEN MKAPLKEEED
301: PNLQFYHTYK DLTCSASSSL ESYSGLFGIK TPKLETGGIP GTSSDPNVQY SNLSFLNDPK LQQLAEWNLL GSPADYYVSQ ILEASYRPQF GGNWPSSEMS
401: NYPFTVFDDP LLSRPNL
101: KNGIMKKAKE LSILCDIDVV LLMFSPAGKP SLCTGEHSIG EVIAKFSQLA PQERAKRKLD NLEALKKTFM KLDHDVNISE FLERSKPTVE VVSEQVKFLQ
201: KHLSEIHTRL SYWTEVEKVD SIDDLQQLEN SIRQSLYQIR VHKENVLQHQ QQQVMSIECK NELQSDIDLD FGIDIEQQLE NFSWVRTDEN MKAPLKEEED
301: PNLQFYHTYK DLTCSASSSL ESYSGLFGIK TPKLETGGIP GTSSDPNVQY SNLSFLNDPK LQQLAEWNLL GSPADYYVSQ ILEASYRPQF GGNWPSSEMS
401: NYPFTVFDDP LLSRPNL
001: MGRVKLKIKK LQNMNGRQCT YTKRRHGIMK KAKELSILCD IDVVLLMFSP MGKASICIGK HSIGEVIAKF AQLSPQERAK RKLENLEALR KTFMKANHDI
101: DISKFLDRIS TPTVEVLSEK IRFLQTQLSD IHTRLSYWTD VDNIDSVDVL QQLEHSLRQS LAQIYGRKAS MPQRQQQQLM SSQCKNQLQT EIDIDFGMEM
201: EQQLENFSWV RTDENMNVPI EEEDPNLQLH HMYKDITCSA SSALGNYSGL FSKSSDILQK LETGSIPGTS ADPNQQFSNL SFLNDQKLKQ LAEWNLLGSP
301: ADYYVSQILE ASYKPQIGGK NNGASSETLP YVAVFDDPLY FWPN
101: DISKFLDRIS TPTVEVLSEK IRFLQTQLSD IHTRLSYWTD VDNIDSVDVL QQLEHSLRQS LAQIYGRKAS MPQRQQQQLM SSQCKNQLQT EIDIDFGMEM
201: EQQLENFSWV RTDENMNVPI EEEDPNLQLH HMYKDITCSA SSALGNYSGL FSKSSDILQK LETGSIPGTS ADPNQQFSNL SFLNDQKLKQ LAEWNLLGSP
301: ADYYVSQILE ASYKPQIGGK NNGASSETLP YVAVFDDPLY FWPN
Arabidopsis Description
AGL94AGAMOUS-like 94 [Source:TAIR;Acc:AT1G69540]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.